Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01784 ATGAATTACATAAAACCGTGTACGAGGAAAATCAACAATGTTGTCACGCTAACTGCTCCAAAATATCACCTTCACGTCGACGCTTCCATCATCAAGACAGGTTTCGATCCCAACACTTACCGTTCCAATTTCCTGCTCAAGGCTTTTCTCCAACGTGGGGATTTGAGTCATGCCCGAAAACTGTTCGACGAAATGCCTCACAAGAATATATTCTCCACCAATACCATGATCATGGGTTACATCAAATCTGGCAATCTTTCTGAAGCCAGAACCTTGTTTGATTCCATGTTTGAACGCACTGCTGTTACCTGGACAATGCTGATTGGTGGATATGCTCAAAACAATCGATTTAGTGAAGCATTTGGCCTTTTCGCTGAGATGGGTAGGCACGGGATCGACCATGATCATGTCAGTTTGGCCACTCTGTTATCTGGGTTCACCGAGTTTGATTCTGTTAATGAAGTAAGACAGGTTCATACCCATGTTATCAAATTGGGGTATGATTCAACCCTTGTTGTTTGCAACTCATTGCTTGATTCTTACTGTAAGACTCGCAACCTTGAATTAGCTTGTCACCTGTTCAATGATGTGCCTGAGAGAGATTCTGTTACTTTTAATGCATTGTTGACGGGATACTCAAAAGAAGGGTTTAATAATGAAGCCATAAACCTGTTTTTTGAGATGCAGGAATTGGGGTATAGGCCAACAGAGTTTACTTTTGCTGCTGTTTTAACAGCAGGTATACAGTTGGATGATATAGAATTTGGTCAACAAGTTCACGGTTTTGTGGTGAAGTGTAACTTTGTTTGGAATGTGTTTGTGGCTAATGCTTTGCTTGATTTTTACTCAAAGCATGACTGTGTTGTTGATGCAAGGAAGCTTTTTGATGAGATGCCGGAGGTGGATGGTATCTCTTACAATGTGCTTGTCACGTGTTATGCGTGGAACGGAAGGGTGGACGAATCTCTTGAACTATTCAGGGAGTTACAGTTCACTGGATTTGACAGGAGGCAATTCCCATTTGCTACCTTGTTGAGCATAGCTGCAATTTCTTTAAACCTTGACATGGGTAGGCAAATTCATTCGCAGACTATTGTAACGGATGCGATTTCGGAACTCCTCGTAGGGAATTCTTTGGTTGACATGTATGCTAAATGTGGCAAATTTGTGGAAGCAAATAGGATTTTTGCAGATCTAGCTCATCAGAGTTCAGTTCCGTGGACAGCCATGATCTCGGCTTATGTTCAGAAGGGGCTCCATGAAGATGGTCTAAAGCTATTTATTGAGATGCAAAGAGCCAAAATAGGTGCCGACGCAGCCACTTACGCCAGCATTGTAAGAGCCTGCGCAAGTTTAGCCTCATTGACACTTGGAAAGCAGTTACACTCGCATATAAACAGATCAGCTTATGCACAAAACGGAGATGGTGACCGCACCCTTAGATTGTTTGAACAAATGGTTCGTTCGGGTTTGCAGCCAGATTCTATGCCTTTTGAACCTGACGAAATAACGTGGTCATCGGTTCTCAACTCATGCAGAATCCATAAAAATCAAGAGTTGGCGAAGATAGCAGCAGAAAAACTATTCAATATGGAGGTACTTAGAGATGCTGCTCCATATGTTAGCATGTCGAACATCTATGCAGCAGCTGGTGAATGGGACAATGTAGGGAAGGTGAAGAAGGCCATGAGAGAAAGAGGAGTGAAAAAAGTCCCTGCTTATAGTTGGGTTGAAATCAAACACAAAACTCATGTTTTCGCAGCCAATGACAAGTCTCATCCACAGATGAGAGAGATAATGAGGAAGCTTGATGAGTTGGAAGAGAAAATGGTGAAACAAGGGTATAAACCAGACTTAAGTTGTTCCCTTCACAATGTGGATGAGGAAGTGAAGGTAGAGTCTCTCAAATATCACAGTGAACGCATTGCCATTGCCTTTGCACTAATTAGCACCCCAGAAGGGTCGCCTATATTGGTGATGAAGAACTTGAGAGCTTGTACTGATTGTCACGCTGCCATCAAGGTAATCTCAAAGATCGTTGATCGGGAAATCACGGTCAGAGATTCAAGCAGGTTCCATCATTTCAGAGATGGATTTTGCTCCTGTAGAGACTACTGGTAG 2121 0.4262 MNYIKPCTRKINNVVTLTAPKYHLHVDASIIKTGFDPNTYRSNFLLKAFLQRGDLSHARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFERTAVTWTMLIGGYAQNNRFSEAFGLFAEMGRHGIDHDHVSLATLLSGFTEFDSVNEVRQVHTHVIKLGYDSTLVVCNSLLDSYCKTRNLELACHLFNDVPERDSVTFNALLTGYSKEGFNNEAINLFFEMQELGYRPTEFTFAAVLTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDCVVDARKLFDEMPEVDGISYNVLVTCYAWNGRVDESLELFRELQFTGFDRRQFPFATLLSIAAISLNLDMGRQIHSQTIVTDAISELLVGNSLVDMYAKCGKFVEANRIFADLAHQSSVPWTAMISAYVQKGLHEDGLKLFIEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHINRSAYAQNGDGDRTLRLFEQMVRSGLQPDSMPFEPDEITWSSVLNSCRIHKNQELAKIAAEKLFNMEVLRDAAPYVSMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFAANDKSHPQMREIMRKLDELEEKMVKQGYKPDLSCSLHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVDREITVRDSSRFHHFRDGFCSCRDYW 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01784 706 Pfam PPR repeat 304 330 IPR002885 -
Car03g01784 706 Pfam PPR repeat 276 300 IPR002885 -
Car03g01784 706 Pfam PPR repeat 43 70 IPR002885 -
Car03g01784 706 Pfam PPR repeat 172 200 IPR002885 -
Car03g01784 706 Pfam PPR repeat 468 491 IPR002885 -
Car03g01784 706 Pfam PPR repeat 72 99 IPR002885 -
Car03g01784 706 Pfam PPR repeat 377 397 IPR002885 -
Car03g01784 706 Gene3D Tetratricopeptide repeat domain 30 150 IPR011990 GO:0005515
Car03g01784 706 Gene3D Tetratricopeptide repeat domain 371 460 IPR011990 GO:0005515
Car03g01784 706 Gene3D Tetratricopeptide repeat domain 151 249 IPR011990 GO:0005515
Car03g01784 706 PANTHER OS01G0913400 PROTEIN-RELATED 468 498 - -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 172 200 IPR002885 -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 407 438 IPR002885 -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 304 334 IPR002885 -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 73 98 IPR002885 -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 468 495 IPR002885 -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 102 132 IPR002885 -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Car03g01784 706 TIGRFAM PPR: pentatricopeptide repeat domain 276 300 IPR002885 -
Car03g01784 706 Pfam DYW family of nucleic acid deaminases 614 706 IPR032867 GO:0008270
Car03g01784 706 PANTHER OS01G0913400 PROTEIN-RELATED 434 468 - -
Car03g01784 706 PANTHER OS01G0913400 PROTEIN-RELATED 24 335 - -
Car03g01784 706 PANTHER OS01G0913400 PROTEIN-RELATED 496 649 - -
Car03g01784 706 PANTHER - 468 498 - -
Car03g01784 706 Gene3D Tetratricopeptide repeat domain 467 643 IPR011990 GO:0005515
Car03g01784 706 Gene3D Tetratricopeptide repeat domain 250 370 IPR011990 GO:0005515
Car03g01784 706 PANTHER - 338 430 - -
Car03g01784 706 Pfam E+ motif 583 610 IPR046849 -
Car03g01784 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Car03g01784 706 Pfam PPR repeat family 404 450 IPR002885 -
Car03g01784 706 Pfam PPR repeat family 201 245 IPR002885 -
Car03g01784 706 Pfam PPR repeat family 101 146 IPR002885 -
Car03g01784 706 PANTHER OS01G0913400 PROTEIN-RELATED 338 430 - -
Car03g01784 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 99 IPR002885 -
Car03g01784 706 PANTHER - 434 468 - -
Car03g01784 706 PANTHER - 24 335 - -
Car03g01784 706 PANTHER - 496 649 - -
Car03g01784 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Car03g01784 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Car03g01784 706 Pfam E motif 515 578 IPR046848 -
Car03g01784 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01784 Car-Chr3 63726141 63728579 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01784 75 706 Glycoside Hydrolase AT3G49170 33.794 1.69e-113 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01784 - - gmx:100793014 1092.8