Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0888 ATGAAATTCCTTAAAATCTTCAAATCCAAACACGTCAATCTCCGAACTTTCAATTCCCTCTCCCAACCCATCACCGTCCCACCAATCACCGAATCTGAACTCCTAAATTCCATCGAATCTTCTAACTGGCATTTCATCAAACAGGCTGCCCCACACTACACTCCCTCTATTCTCTCTTCCACTCTAACCTCCCTCCGCAACAACCCTCAACTCGTCCTTCAGTTTCTCTCCCATCTCAACACCCACCCTCATTCCCTCGACTTAACCACCTCTTCCCTGGCTGCTTGCATCCTCTGTCGCCTCCCATCTCCCAAACCCTCCATTAACCTCTTACAGCGCCTCATTCTATCTTCCACTCTCACCAACACAACAATTTTCCATGAGTTGGCACTGTCCCGCGACCGCGTGGATGCCAAGAGTAGTCTCATCTTTGACCTTCTGGTCAGGGCCTATTGTGAACTCAAGAAGCCCAATGAGGCGTTGGAGTGTTTCTACTTGATGAAGGAAAAGGGTGTTGAGCCCAACATTGAGACTTGCAATCAGATGTTGAGTCTGTTTTTGAAACTGAACAGGACTCAGATGGCTTGGGTTTTGTATGCTGAGATGTTTAGGATGAATATAAGATCTAGTGTATACACTTTTAACATCATGGTTAATGTGTTGTGTAAAGAAGGGAAATTGAAGAAGGCAAATGAGTTTATTGGGCACATGGAGGCTCTTGGGGTGAAGCCTAATGTTGTCACCTATAACACTGTTATTCATGGACACTGTGTGAGAGGGAAGTTCCAGAGGGCCCGTGTGATCTTTCAAACAATGAAAGATAAAGGTCTTGAGCCTGATTGCTATACATATAATTCTTTCATATCTGGGCTGTGTAAAGAACGAAGACTTGAGGAGGCGTCTGGTTTACTTTGTAAAATGCTAGAAATTGGCTTGCTTCCAAATGCAGTAACATATAATGCTTTGATTGATGGGTATTGCAACAAAGGGGATCTGGATAAGGCTTTTGCCTACAGGGATGAGATGATAAGTAAAGGTGTAACGACATCTCTGGTTACCTACAATTTGTTTATCCATGCACTGTTTATGGAAGGAAGGATGGGGGAGGCTGATAATATGGTACAAGAAATGCAAGAAAAAGGCATGAAACCTGATGCTGTTACGTATAACATATTGATTAATGGTTATTGCAGATGCGGGGATGCAAAGAGAGCCTTCAGCCTTCTTGATGAAATGGTGGGAAAAGGGATTCAGCCAACTTTGGTCACATATACATCACTTATATATGTTCTGGGTAAAAGGAATAGAATGAAAGAAGCAGATGCCTTGTTTATTAAGATTCAACAAGAAGGTCTTTTGCTAGATACTGTAATGTTTAACGCGTTGATCGATGGTCACTGTGCAAATGGTAATATTGATCGTGCATTTCAGCTCTTGGAACAGATGGATAACATGAAGGTTCTTCCTGATGAAATCACTTATAACACCTTGATGCAAGGATACTGCAGAGAGGGGAAAGTGGAGGAAGCTAGGCAACTTCTTGATAAGATGAAGAGAAGGGGGATCAAACCTGATCACATTAGTTACAACACACTCATTAGCGGTTACAGTAAAAGAGGTGATATGAAGGATGCTTTTAGAGTTCGCGATGAAATGATGACTACAGGATTTGATCCTACAATTCTCACTTACAATGCTCTTATACAAGGTTTGTGCAAAAATCGGGAAGGTGAGCATGCTGAAGAGCTCCTCAAAGAAATGGTAAGTAAAGGCATTACTCCTGACGACACCACCTACCTATCTATAATTGAAGCGATGGAGAAAGTTGATGATCTGGAGGAAAATGATGATAAATGA 1857 0.4216 MKFLKIFKSKHVNLRTFNSLSQPITVPPITESELLNSIESSNWHFIKQAAPHYTPSILSSTLTSLRNNPQLVLQFLSHLNTHPHSLDLTTSSLAACILCRLPSPKPSINLLQRLILSSTLTNTTIFHELALSRDRVDAKSSLIFDLLVRAYCELKKPNEALECFYLMKEKGVEPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSVYTFNIMVNVLCKEGKLKKANEFIGHMEALGVKPNVVTYNTVIHGHCVRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKERRLEEASGLLCKMLEIGLLPNAVTYNALIDGYCNKGDLDKAFAYRDEMISKGVTTSLVTYNLFIHALFMEGRMGEADNMVQEMQEKGMKPDAVTYNILINGYCRCGDAKRAFSLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFIKIQQEGLLLDTVMFNALIDGHCANGNIDRAFQLLEQMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDKMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNREGEHAEELLKEMVSKGITPDDTTYLSIIEAMEKVDDLEENDDK* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0888 618 Gene3D Tetratricopeptide repeat domain 343 413 IPR011990 GO:0005515
Pvu1g0888 618 Gene3D Tetratricopeptide repeat domain 505 617 IPR011990 GO:0005515
Pvu1g0888 618 Gene3D Tetratricopeptide repeat domain 415 504 IPR011990 GO:0005515
Pvu1g0888 618 Gene3D Tetratricopeptide repeat domain 125 221 IPR011990 GO:0005515
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Pvu1g0888 618 Gene3D Tetratricopeptide repeat domain 227 342 IPR011990 GO:0005515
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Pvu1g0888 618 PANTHER ATPASE EXPRESSION PROTEIN 3 26 612 - -
Pvu1g0888 618 SUPERFAMILY HCP-like 253 447 - -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Pvu1g0888 618 SUPERFAMILY HCP-like 389 591 - -
Pvu1g0888 618 Pfam PPR repeat 451 482 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 457 491 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 317 347 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 247 281 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 387 420 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 422 455 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 352 386 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Pvu1g0888 618 TIGRFAM PPR: pentatricopeptide repeat domain 563 595 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Pvu1g0888 618 PANTHER OS04G0477200 PROTEIN 26 612 - -
Pvu1g0888 618 Pfam PPR repeat 146 172 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Pvu1g0888 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Pvu1g0888 618 Pfam PPR repeat family 244 293 IPR002885 -
Pvu1g0888 618 Pfam PPR repeat family 384 430 IPR002885 -
Pvu1g0888 618 Pfam PPR repeat family 174 223 IPR002885 -
Pvu1g0888 618 Pfam PPR repeat family 489 530 IPR002885 -
Pvu1g0888 618 Pfam PPR repeat family 314 361 IPR002885 -
Pvu1g0888 618 Pfam PPR repeat family 559 606 IPR002885 -
Pvu1g0888 618 SUPERFAMILY HCP-like 148 311 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0888 58 614 Glycosyltransferase AT1G05670 29.912 5.00e-94 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0888 - - gmx:100791654 1081.63