Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0407 ATGCTTAGAACATTAGCTAGGGTGTTCAAGCGAGCCACCCTTGCCAATGACTTGCTTCAAAAACGCAGCAGATTCTATGCAACCACGGTTGGTGGAAGAAGGTTAGAAGGAAAAGTGGCACTCATAACTGGATCAGCAAGTGGAATCGGCAAGGCCACGGCCCATGAGTTTGTCCAGCATGGAGCCCAAGTAATCATTGCTGACAATGACACCAAACTTGGCCCACAAGTTGCAAAAGAGTTGGGCCCATCAGCCCACTACACGGAGTGCGACGTCACTGTGGAGGCCCAAGTGGCGGAAGCCGTGAACGTTGCCGTGGCCCACTATGGCAAGCTGGACATCATGTACAACAATGCGGGCATCCCAGGCCCATCAATTCCACCAAGCATAGTAGACCTAGACCTTGATGAGTTTGATAGAGTCATGAGGATCAACATAAGGGGAATGATTGCTGGTATAAAGCATGCGGCCCGGGTCATGATTCCAGTGGGATCAGGGTCCATTCTATGCACATCTAGCATAAGTGGGGTTTTGGGTGGGCTTGGGCCTCATCCTTACACAATATCAAAGTTTACAATACCAGGGGTAGTGAAATCTTTGGCTAGTGAGCTATGCAAAGTTGGGATTAGGATCAATTGCATATCACCAGCTCCAATTCCTACACCTATGGTTTTGGCACAAATTGGGAAGTTTTATCCTGGTTTAACCCAAGAACAGATAGTGGGCATTGTGAATGGGTTTGGTGAGCTCAAAGGTGCTAAGTGTGAAGACATTGATGTGGCAAAGGCTGCATTGTACTTAGCATCAGATGAAGCAAAGTTTATTTCAGGTCAAAATCTCATTGTGGATGGAGGGTTCACCAGCTTTAAAAATCTTACATTCCCTTCTCCAGATCAAACTGCTTAA 906 0.4702 MLRTLARVFKRATLANDLLQKRSRFYATTVGGRRLEGKVALITGSASGIGKATAHEFVQHGAQVIIADNDTKLGPQVAKELGPSAHYTECDVTVEAQVAEAVNVAVAHYGKLDIMYNNAGIPGPSIPPSIVDLDLDEFDRVMRINIRGMIAGIKHAARVMIPVGSGSILCTSSISGVLGGLGPHPYTISKFTIPGVVKSLASELCKVGIRINCISPAPIPTPMVLAQIGKFYPGLTQEQIVGIVNGFGELKGAKCEDIDVAKAALYLASDEAKFISGQNLIVDGGFTSFKNLTFPSPDQTA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0407 301 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Gso16g0407 301 PRINTS Glucose/ribitol dehydrogenase family signature 110 121 IPR002347 -
Gso16g0407 301 PRINTS Glucose/ribitol dehydrogenase family signature 160 176 IPR002347 -
Gso16g0407 301 PRINTS Glucose/ribitol dehydrogenase family signature 186 205 IPR002347 -
Gso16g0407 301 PRINTS Glucose/ribitol dehydrogenase family signature 207 224 IPR002347 -
Gso16g0407 301 PRINTS Glucose/ribitol dehydrogenase family signature 250 270 IPR002347 -
Gso16g0407 301 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 298 - -
Gso16g0407 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 110 121 IPR002347 -
Gso16g0407 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
Gso16g0407 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 205 IPR002347 -
Gso16g0407 301 PANTHER ALCOHOL DEHYDROGENASE-LIKE PROTEIN 7 298 - -
Gso16g0407 301 Pfam Enoyl-(Acyl carrier protein) reductase 44 287 - -
Gso16g0407 301 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 287 IPR036291 -
Gso16g0407 301 Gene3D - 27 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0407 Gso-Chr16 4681917 4685443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0407 35 287 Acyl Lipid Metabolism Gene Families AT1G63380 30.418 8.62e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0407 - - gmx:100808525 567