Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1692 ATGCTCAGAACACTAGCCAGGGAGTTCAAGCTCACCACCCTTGCTAATGGTTTGCTTAAAAAACGCAGCAGATTCTATGGAACGGTTGGTGGAAGAAGGCTTGAAGGAAAAGTGGCAATCATAACCGGATCAGCAAGTGGACTAGGAAAAGCAACAGCCCATGAATTCATCCAGCATGGGGCCCAAGTCATCATCGCCGACAACGACACCAAACTCGGGCCGCAAGTTGCGAAAGAGTTGGGCCCATCAGCCCGCTACGTGGAATGCGACGTCACGATCGAGGCCCAAGTAGCAGAAGCTGTGGACATTGCCGTGGCCCACTACGGCAAACTGGACATCATGTACAACAACGCCGGCATAACAGGCCCAACAATCCCTCCAAGCATAACAGAGCTAAACCTTGATGAGTTTGACAAGGTGATGAAAATCAATGTCAGGGGAATGATTGCGGGTATAAAGCATGCGGCCCGAGTCATGATACCCGCGGGCGCCGGGTCCATTCTATGCACATCAAGCATAAGTGGGACAATGGGTGGGCTTGGGCCTCACCCATACACAATATCAAAGTTTACAATACCTGGGGTAGTGAAATCTGTTGCTAGTGAGCTTTGTAAAGCTGGGATAAGAGTAAATTGCATATCCCCAGCTCCAATTCCTACACCTATGTCTTTGACTCAGATTGGGAATTTTTTTCCTGGTATGACCCAAGAGCAGGTAGTGGGCCTTGTGAATGGGCTTAGTGAGCTCAAGGGGGCCAAGTGTGAGGACATTGATGTGGCCCGGGCAGCGTTGTTTTTGGCATCAGATGAAGCAAAGTTCATCTCAGGCCACAATTTAATTGTGGATGGAGGGTTCACCTGCTTTAAAAACCTCTCTTTCCCTTCTCCAAACTAA 894 0.4933 MLRTLAREFKLTTLANGLLKKRSRFYGTVGGRRLEGKVAIITGSASGLGKATAHEFIQHGAQVIIADNDTKLGPQVAKELGPSARYVECDVTIEAQVAEAVDIAVAHYGKLDIMYNNAGITGPTIPPSITELNLDEFDKVMKINVRGMIAGIKHAARVMIPAGAGSILCTSSISGTMGGLGPHPYTISKFTIPGVVKSVASELCKAGIRVNCISPAPIPTPMSLTQIGNFFPGMTQEQVVGLVNGLSELKGAKCEDIDVARAALFLASDEAKFISGHNLIVDGGFTCFKNLSFPSPN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1692 297 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 296 - -
Lja1g1692 297 Pfam Enoyl-(Acyl carrier protein) reductase 43 286 - -
Lja1g1692 297 Gene3D - 28 292 - -
Lja1g1692 297 PANTHER ALCOHOL DEHYDROGENASE-LIKE PROTEIN 11 296 - -
Lja1g1692 297 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Lja1g1692 297 PRINTS Glucose/ribitol dehydrogenase family signature 185 204 IPR002347 -
Lja1g1692 297 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Lja1g1692 297 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Lja1g1692 297 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Lja1g1692 297 PRINTS Glucose/ribitol dehydrogenase family signature 249 269 IPR002347 -
Lja1g1692 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 287 IPR036291 -
Lja1g1692 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
Lja1g1692 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Lja1g1692 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1692 Lja-Chr1 18652040 18655268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1692 34 286 Acyl Lipid Metabolism Gene Families AT3G55290 32.331 2.64e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1692 - - gmx:100808525 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1692 1 18652040 18655268 Lja1g1692 1 18652040 18655268 ECH