Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0883 ATGTTGATCTTTGAGACAAATGGGACTCTACGTATTGATCACACTCTAATGATCAAGTCAAGCTTTCTCACTTTTATCTTGGAGAAAGTTCATCACATCTTTACAAACCCTGCAAAATTAGGCACAAAGAAAGAGCTTTCCATTTTCCGTTTCCCTTCCATGAATTACATCAAAGCATGTACGAGGAAAAACGGCACTTTGACATTCCAAAAACGACACTTTCAGGTCGATGCTTCCATCATCAAGACGGGCTTCGATCCCAACACATATCGTTTCAACTTCCAAGTGAAGACCCATATCCTACATGGGGATTTGGGTGCAGCACGCAAACTGTTCGACGAAATGCCTCACAGGAACATCATCTCCACCAACACTATGATCACGGGTTACTTAAACTCTGGCAACCTTTCCGCTGCTAGGAGCTTGTTTGACGGCATGGTTGAACGCTCGGTTGTTACATGGACAATGCTCATCGGTGGCTACGCTCAGAACAATAAGTTCCGCGAAGCTTTCGGTCTCTTCGTTGATATGTGTAGGCACGACATGGCTCCGGATCATGTCACCTTGACGACTCTGTTATCTGGGTTCACTGAGTTTGACAATGTCAATGAAGTCGCACAAGTGCATGCCCATGTTGTCAAATTGGGGTATGATTCCACCCTCACGGTTTGCAACTCGTTGCTTGATTCTTACTGTAAGACGCGTAGCCTTGGTTTGGCTTGTCACCTCTTCAAGCATATGCCAGAGAAAGATAATGTCACTTTCAATGTGTTGTTGACAGGGTACTCCAAAGAGGGCTTCAATCATGAAGCTATCAACTTGTTTTTCAAGATGCAGAATTTGGGGTTCAAGCCCACGGACTTTACTTTTGCTGCGGTTTTAACTTCAGGCATACAGTTGAACGATATAGAATTTGGGCAACAAGTTCACAGTTTTGTGGTGAAGTGCAATTTTGTGTGGAATGTGTTTGTGGCTAATGCTTTGCTTGATTTCTACTCGAAGCATGACCGTGTTGTTGAAGTGAGGAAGCTTTTTTATGAGATGCCGGAGGTGGATGGTATCTCTTACAATGTGATTATCACGTGTTGTGCATGGAATGAAAGAGTGGAAGAATCGCTTGAACTTTTCAGGGACTTACAGTTTACAAGATTTGACCGAAGGCAATTCCCATTTGCAACCTTGTTGAGCATTACTGCAAATGCTTTGAACCTGGAAGTGGGTAGGCAAATTCATTCCCAGGCTATTGTAACAGATGCCATTTCGGAAATTCTGGTTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAAATTTGGGGAAGCAAATAGGATTTTTGCTGATCTGGCTCATCAAAGTTCAGTTCCATGGACAGCCCTGATCTCGGGTTATGTTCAGAAGGGGCTCCATGAAGACAGCCTAAAGCTTTTTGTTGAGATGCAAAGAGCCAAAATACGTGCTGACTCAGCCACTTACGCCAGCATCTTAAGAGCCTGCGCAAATCTAGCTTCACTGACACTGGGAAAACAGTTACACTCGCATATAATCAGGTCTGGATGCATTTCAAATGTATTTTCTGGGAGTGCACTGGTTGACATGTATGCAAAATGTGGATCCATAAAAGAAGCTCTTCATATGTTTCAAGAGATGCCTACGAGGAACTGTGTCACCTGGAATGCACTGATTTCAGCTTATGCACAAAACGGAGACGGTGGCCTCGCTCTTAGATCATTTGAACAAATGGTTCATTCAGGTCTGCAACCAAATTCTGTTAGCTTCCTTAGCATTTTGTGTGCCTGCAGTCACTGTGGTCTAGTTGAAGAAGGACTACAATACTTCAGCTCCATGACTCAAGTGTATAAATTTGTACCCAAAAGAGAGCATTATGCATCAATGGTTGATATGCTATGTCGCAGTGGACGATTTGATGAGGCTGAGAAATTGATGGCTCGGATGCCGTTTGAACCAGACGAGGTAATGTGGACATCGATTCTCAACTCATGCAGGATTCATAAGAATCAAGAGATGGGAAAGAGAGCAGCAGATCAACTATTCAGTATGAAGATCCTTAGAGATGCTGCTCCATATGTTAGCCTGTCCAATATCTATGCAGCAGCTGGTGAATGGGAGAATGTGGGAAAGGTGAAGAAGGCCATGAGAGAGCGAGGGGTCAGAAAGGTCCCAGCATACAGTTGGGTTGAAATCAAACAGATGACTCATGTTTTCTCAGCCAATGACATGTCTCACCCACAGATGAAAGAGATAACAAAGATGCTTGATGAGTTGGAAGAGCAAATGGAGAAACAAGGGTATAAACCTGACTCAAGTTGTGCCCTTCACAATGTGGATGAGGAAGTTAAGTTAGAGTCCCTAAAGTATCACAGTGAACGCATTGCCATTGCTTTTGCACTGATTAGCACCCCAGAAGGGTCACCCATATTGGTGATGAAGAATCTACGAGCTTGTAATGATTGCCACGCCGCCATCAAGGTAATCTCCAAGATAGTAAACCGGGAAATCACAGTCAGGGATTCAAGTAGATTCCATCATTTCAGAGATGGATCTTGCTCCTGTAAGGACTACTGGTAG 2589 0.4361 MLIFETNGTLRIDHTLMIKSSFLTFILEKVHHIFTNPAKLGTKKELSIFRFPSMNYIKACTRKNGTLTFQKRHFQVDASIIKTGFDPNTYRFNFQVKTHILHGDLGAARKLFDEMPHRNIISTNTMITGYLNSGNLSAARSLFDGMVERSVVTWTMLIGGYAQNNKFREAFGLFVDMCRHDMAPDHVTLTTLLSGFTEFDNVNEVAQVHAHVVKLGYDSTLTVCNSLLDSYCKTRSLGLACHLFKHMPEKDNVTFNVLLTGYSKEGFNHEAINLFFKMQNLGFKPTDFTFAAVLTSGIQLNDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRVVEVRKLFYEMPEVDGISYNVIITCCAWNERVEESLELFRDLQFTRFDRRQFPFATLLSITANALNLEVGRQIHSQAIVTDAISEILVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDSLKLFVEMQRAKIRADSATYASILRACANLASLTLGKQLHSHIIRSGCISNVFSGSALVDMYAKCGSIKEALHMFQEMPTRNCVTWNALISAYAQNGDGGLALRSFEQMVHSGLQPNSVSFLSILCACSHCGLVEEGLQYFSSMTQVYKFVPKREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEVMWTSILNSCRIHKNQEMGKRAADQLFSMKILRDAAPYVSLSNIYAAAGEWENVGKVKKAMRERGVRKVPAYSWVEIKQMTHVFSANDMSHPQMKEITKMLDELEEQMEKQGYKPDSSCALHNVDEEVKLESLKYHSERIAIAFALISTPEGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFRDGSCSCKDYW* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0883 862 Gene3D Tetratricopeptide repeat domain 55 149 IPR011990 GO:0005515
Pvu1g0883 862 Pfam PPR repeat 629 652 IPR002885 -
Pvu1g0883 862 Pfam PPR repeat 354 379 IPR002885 -
Pvu1g0883 862 Pfam PPR repeat 326 350 IPR002885 -
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Pvu1g0883 862 Coils Coil 752 772 - -
Pvu1g0883 862 Gene3D Tetratricopeptide repeat domain 158 301 IPR011990 GO:0005515
Pvu1g0883 862 Pfam DYW family of nucleic acid deaminases 770 862 IPR032867 GO:0008270
Pvu1g0883 862 Gene3D Tetratricopeptide repeat domain 505 622 IPR011990 GO:0005515
Pvu1g0883 862 Gene3D Tetratricopeptide repeat domain 623 799 IPR011990 GO:0005515
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 553 IPR002885 -
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 625 655 IPR002885 -
Pvu1g0883 862 Pfam E+ motif 739 762 IPR046849 -
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 149 IPR002885 -
Pvu1g0883 862 PANTHER - 72 386 - -
Pvu1g0883 862 PANTHER - 388 489 - -
Pvu1g0883 862 PANTHER - 483 803 - -
Pvu1g0883 862 Pfam E motif 671 734 IPR046848 -
Pvu1g0883 862 Pfam PPR repeat family 150 196 IPR002885 -
Pvu1g0883 862 Pfam PPR repeat family 554 600 IPR002885 -
Pvu1g0883 862 Pfam PPR repeat family 454 501 IPR002885 -
Pvu1g0883 862 Pfam PPR repeat family 250 294 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 223 250 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 457 488 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 152 185 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 556 589 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 122 151 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 629 652 IPR002885 -
Pvu1g0883 862 TIGRFAM PPR: pentatricopeptide repeat domain 529 556 IPR002885 -
Pvu1g0883 862 Gene3D Tetratricopeptide repeat domain 416 504 IPR011990 GO:0005515
Pvu1g0883 862 Gene3D Tetratricopeptide repeat domain 302 415 IPR011990 GO:0005515
Pvu1g0883 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Pvu1g0883 862 PANTHER OS01G0913400 PROTEIN-RELATED 388 489 - -
Pvu1g0883 862 PANTHER OS01G0913400 PROTEIN-RELATED 483 803 - -
Pvu1g0883 862 PANTHER OS01G0913400 PROTEIN-RELATED 72 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0883 Pvu-Chr1 15239192 15242946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0883 103 862 Glycoside Hydrolase AT3G49170 34.452 6.89e-155 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0883 - - pvu:PHAVU_001G085300g 1741.86