Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1859 ATGCTCAGAACATTAGCCAGGCAGTTCAAGCGCTCGACCCTTATCAATGATTTGCTTCAAAAACGCAGCAGATTCTATGCAACTACCGTTGGTGGAAGAAGGCTAGAGGGAAAAGTGGCACTCATAACAGGATCAGCAAGTGGACTCGGAAAGGCCACGGCCCATGAGTTTGTCCAACATGGGGCCCAAGTAATCATTGCTGACAATGACGCCGAACTTGGGCCACAGGTTGCAAAAGAGTTGGGCCCATCGGCCCGCTACGTGGAATGCGATGTCAGTGTTGAGGCCCAAGTAGCAGAAGCCGTAAATATTGCCATGGCCCATTGTGGGAAGCTGGACATCATGCACAACAATGCTGGCATCACGGGCCCAACAATTCCACCAAGCATAGCTGAGCTAGACCTTGATGAGTTTGATAGGGTCATGAGGATCAACATCAGGGGAATGATTGCTGGCATAAAGCATGCGGCCCGGGTCATGATACCAGTGGGCTCTGGGTCCATTCTGTGCACTTCAAGCATAAGTGGGGTCATGGGTGGGCTTGGGTCTCATCCATATACAATATCAAAGTTTACAATACCTGGGGTAGTCAAATCTGTGGCTAGTGAACTATGCAAATCTGGGATCAGGATCAATTGCATATCCCCAGCTCCAATTCCTACACCTATGGTTTTGACTCAAATAGGGAAGCTTTATCCTGGTTTAACCCAAGAACAGATAATGGGTATTGTGCATGGGTTTGGTGAGCTCAAAGGTACTAAGTGTGAGGACATTGATGTGGCAAGGGCTGCATTGTACTTGGCATCAGATGAAGCAAAGTTTATCTCAGGCCACAACCTCATTGTGGATGGAGGGTTCACCAGCTTTAAAAGTCTTATGTTCCCTTCTCCAGATCAAACTGCTTAA 906 0.4801 MLRTLARQFKRSTLINDLLQKRSRFYATTVGGRRLEGKVALITGSASGLGKATAHEFVQHGAQVIIADNDAELGPQVAKELGPSARYVECDVSVEAQVAEAVNIAMAHCGKLDIMHNNAGITGPTIPPSIAELDLDEFDRVMRINIRGMIAGIKHAARVMIPVGSGSILCTSSISGVMGGLGSHPYTISKFTIPGVVKSVASELCKSGIRINCISPAPIPTPMVLTQIGKLYPGLTQEQIMGIVHGFGELKGTKCEDIDVARAALYLASDEAKFISGHNLIVDGGFTSFKSLMFPSPDQTA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1859 301 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 10 298 - -
Ssu4g1859 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
Ssu4g1859 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 205 IPR002347 -
Ssu4g1859 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 110 121 IPR002347 -
Ssu4g1859 301 Pfam Enoyl-(Acyl carrier protein) reductase 44 287 - -
Ssu4g1859 301 Gene3D - 27 295 - -
Ssu4g1859 301 PANTHER ALCOHOL DEHYDROGENASE-LIKE PROTEIN 10 298 - -
Ssu4g1859 301 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 287 IPR036291 -
Ssu4g1859 301 PRINTS Glucose/ribitol dehydrogenase family signature 250 270 IPR002347 -
Ssu4g1859 301 PRINTS Glucose/ribitol dehydrogenase family signature 207 224 IPR002347 -
Ssu4g1859 301 PRINTS Glucose/ribitol dehydrogenase family signature 186 205 IPR002347 -
Ssu4g1859 301 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Ssu4g1859 301 PRINTS Glucose/ribitol dehydrogenase family signature 160 176 IPR002347 -
Ssu4g1859 301 PRINTS Glucose/ribitol dehydrogenase family signature 110 121 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1859 Ssu-Chr4 33965994 33968594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1859 35 287 Acyl Lipid Metabolism Gene Families AT3G55290 32.319 1.41e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1859 - - gmx:100808525 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1859 4 33965994 33968594 Ssu4g1859 4 33965994 33968594 ECH