Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1855 ATGAATCACATAAAATCATGTACGAGGAAAACCGGGATTCACAACCTCAGCACCTTGACATCTCCAAAACCACACCTTCATGTCGACGCTTCCATCATCAAGACAGGCTTCGATCCCAGCACGTGCCGTTTCAATTTCCAAGTGAAGACCCATCTCCAAAGCGGGGATTTGGTTGCTGCACGCAAACTGTTTGACGAAATGCCTCACAAGAACACCATCTCCACCAACACCATGATCATGGGTTACATAAACTCTGGCAACCTTTCCACTGCTAGGAGCTTGTTTGACAGCATGGTTCAACGCACGGTTGTTACCTGGACAATGCTGATCGGCGGCTATGCGCAGAACAACCGGTTCCGAGAAGCTTTCGGTCTCTTTGCCGATATGTGTAGGCACGGCTCGGTTCCGGATCATGTCACATTGGCCACTCTCTTATCTGGGTTCACTGAGTTTGACAGTGTCAATGAAGTAGCAGAAGTGCATGCCCGTGTTGTCAAATTGGGGTATGATTCCACCCTCATGGTTTGCAACTCGTTGCTTGATTCTTATTGTAAGACACGTAGCCTTGGTTTGGCTTGTCACCTCTTCAAGCATATGCCAGAGAAAGATAATGTCACTTTCAATGCGTTGTTGACGGGGTACTCCAAAGAGGGGTTCAATCATGATGCCATAAACCTGTTTTTCAAGATGCAGGATTTGGGGTTTAGGCCCACAGAATTTACTTTTGCTGCAGTTTTAACTGCAGGGATACAGTTGGATGACTTGGAATTTGGGCAACAAGTTCACAGTTTTGTGGTGAAGTGTAATTTTGTGTGGCATGTGTTTGTGGCTAATGCTTTGCTTGATTTCTACTCGAAGCATGACCGTGTTGTTGAAGCAAGGAAGCTTTTTGATGAGATGCCGGAGGTGGATGGTATCTCTTATAATGTGCTCGTTACATGTTATGCGTGGAATGGAAGAGTGGAAGAATCTCTTGAACTTTTCAGGGAGTTACAGTCTACTAGATTTGACCGGAGGCAATTCCCATTTGCTACCTTGTTGAGTATTGCTGCAAATGCTTTGAACCTGGAACTGGGTAGGCAAATCCATTCCCAGGCTATTGTAACCAATGCCATTTCAGAAATTCTGgaccaatttgtGAATTTCTTGGATCATTCCGAATGA 1164 0.4493 MNHIKSCTRKTGIHNLSTLTSPKPHLHVDASIIKTGFDPSTCRFNFQVKTHLQSGDLVAARKLFDEMPHKNTISTNTMIMGYINSGNLSTARSLFDSMVQRTVVTWTMLIGGYAQNNRFREAFGLFADMCRHGSVPDHVTLATLLSGFTEFDSVNEVAEVHARVVKLGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMPEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPTEFTFAAVLTAGIQLDDLEFGQQVHSFVVKCNFVWHVFVANALLDFYSKHDRVVEARKLFDEMPEVDGISYNVLVTCYAWNGRVEESLELFRELQSTRFDRRQFPFATLLSIAANALNLELGRQIHSQAIVTNAISEILDQFVNFLDHSE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1855 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 101 IPR002885 -
Ssu4g1855 387 Gene3D Tetratricopeptide repeat domain 252 382 IPR011990 GO:0005515
Ssu4g1855 387 Gene3D Tetratricopeptide repeat domain 4 100 IPR011990 GO:0005515
Ssu4g1855 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Ssu4g1855 387 PANTHER OS01G0913400 PROTEIN-RELATED 25 338 - -
Ssu4g1855 387 Gene3D Tetratricopeptide repeat domain 122 251 IPR011990 GO:0005515
Ssu4g1855 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Ssu4g1855 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Ssu4g1855 387 PANTHER - 25 338 - -
Ssu4g1855 387 Pfam PPR repeat family 102 148 IPR002885 -
Ssu4g1855 387 Pfam PPR repeat family 202 247 IPR002885 -
Ssu4g1855 387 Pfam PPR repeat 278 302 IPR002885 -
Ssu4g1855 387 Pfam PPR repeat 306 333 IPR002885 -
Ssu4g1855 387 Pfam PPR repeat 74 101 IPR002885 -
Ssu4g1855 387 TIGRFAM PPR: pentatricopeptide repeat domain 175 202 IPR002885 -
Ssu4g1855 387 TIGRFAM PPR: pentatricopeptide repeat domain 104 137 IPR002885 -
Ssu4g1855 387 TIGRFAM PPR: pentatricopeptide repeat domain 306 334 IPR002885 -
Ssu4g1855 387 TIGRFAM PPR: pentatricopeptide repeat domain 205 239 IPR002885 -
Ssu4g1855 387 TIGRFAM PPR: pentatricopeptide repeat domain 74 101 IPR002885 -
Ssu4g1855 387 TIGRFAM PPR: pentatricopeptide repeat domain 278 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1855 Ssu-Chr4 33923602 33926603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1855 119 375 Glycoside Hydrolase AT3G49170 27.376 9.23e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1855 - - gmx:100793014 687.182