Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1549 ATGAATCACATTAAAACATGTACGAGGAAAAACGCGATCCACAACCTCAACACTTTGGGTCCACCACCATCTCCAAAACGACACCTTCAACTCGACGCTTCGATCATCAAAACAGGCTTCGATCCCAACACATGCCATTTCAATTTCAAGGTGAAGACCCATCTCCAACGCGGAGAGTTGGGTGCAGCCCGCCAACTGTTCGACGAAATTCCCCACAAGAACACCATATCCACCAACATCATGATCATGGGTTACATAAACTCTGGCAATCTTTCTAATGCTAGGAGCTTGTTTGACACTATGATTCAACGCACAGTTGTTACTTGGACAATGATGATCGGTGGTTATGCTCAAAACTGTCGGTTCCGTGAAGCTTTTGGTCTCTTTGCCGATATGTATAGGCATGAGACTGTTCCGGATCATGTCACCTTGGCCACTCTCTTATCTGGGTTCACTGAGTTTGACTCTGTCAATGAAGTAGCTCAAGTTCATGCCCATGTTGTCAAACTGGGGCATGATTCCACCCTCATGGTTTGCAACTCGTTGCTTGATTCTTATTGTAAAACGCGTAATGTCAGTTTAGCTTGTCACCTCTTTGACCTTATGCCAGATAAAGATAATGTAACTTTTAATGCATTGTTGACGGGGTACTCCAAAGAGGGGTTTAATCATGATGCCATAAAGCTGTTTTTCAAAATGCAGGATTTGGGAATTAGGCCCACGGAATTTACTTTTGCTGCAGTTTTAACTGCAGGGATACAGTTGGATGATATTGAATTTGGGCAACAAGTTCACGGTTTTGTGGTGAAGAGTAACTTTGCGTGGAATGTGTTTGTGGCTAATGCTTTGCTCGATTTCTATTCGAAGCATGACCGTGTTGCTGAAGCAAGGAAATTTTTTTATGAGATGCCAGAGGTGGATGGTATCTCTTATAATGTACTCATCACGTGTCATGCGTGGAATGGGAAAGTCGATGAATCTCTTGTACTTTTCAGGGAGTTACAGTTTACTAGATTTGACAGGAGGCAATTCCCGTTTGCTACCTTGTTGAGCATTGCTGCTAATTCTTTAAACCTGGAAATGGGTAGGCAAATTCATTGCCAGACTATTGTAACAGCTGCCATTTCAGAAATTTTGGTTGAGAATTCTTTGGTTGACATGTATGCTAAATGTGACAAATTTGGGGAAGCAAATAGGATTTTTGCAAATCTTGCTCGTCAAAGTTCAGTTCCATGGACAGCCCTGATCTCAGCTTATGTTCAGAAGGGACTTCATGAAGATGGCCTAAAGCTATTCATTGAGATGCAAAGAGCCAAAATAACCGCGGACTCGTCCACTTACGCCAGCATTGGAAGAGCCTGTGCAAATTTAGCTTCACTGACATTGGGGAAACAGTTACACTCACATATAATCAGATCAGGATACATTTCAAATGTGTTTTCTGGGAGTGCACTGGTTGACATGTATGCAAAATGTGGATCCATAAAAGATGCACTTAAAATGTTTCAAGAGATGCCCGTGAGAAATTCTGTTTCCTGGAATGCACTGATTTCAGCTCATGGGCAAAATGGGGACGGTGACCTTACTCTTAGGTCATTTGAACAAATGGTTCATTCAGGTCTGCAACCAGATTCTGTTAGCTTCCTTAGCGTTTTATGTGCCTGCAGCCACTGCGGTCTAATTGAAGAAGGATTACAGTACTTCAATTCCATGACTCAAATGTATAAACTTGTCCCCAAAAGAGAGCATTATGTATCAATAGTTGATATGTTATGTCGCAGTGAAAGATTTGATGAGGCTGAAAATTTGATGGCTTGTATGCCTTTTGAACCCGATGAGATAATGTGGACATCAATTCTCAATTCATGTAGAATCCATAAAAACCAAGAGTTGGCAAAGAAAGCAGCAGACCAACTATTCAATATGAAGGCCCTCAGGGATGCTGCTCCATATGTTAGCATGTCCAATATCTATGCAGCAGCTGGTGAATGGGACAACGTATGCAAGGTGAAGAAGGCCATGAGAGACCGAGGAGTTAGAAAGGTCCCAGCATACAGTTGGGTTGAAATCAAACACAAGACTCATGTGTTCTCAGCCAATGACAAGTCTCACCCCCAAATGAGAGAGATAATGAGGAAGCTTGATGAGCTGGAAGAGCAAATGGAGAAACAAGGGTATAAACCTGACTCAAGTTGTGCCCTTCACAATGTGGATGAGGAAGTCAAGGTAGAATCCCTAAAATATCACAGTGAACGCATTGCTATTGCCTTTGCACTAATTAGCACCCCAAAAGGATCACCTATTTTGGTTATGAAAAATCTGCGAGCTTGTAATGATTGTCACACAGCCATTAAGGTAATCTCCAAGATTGTAAATCGGGAAATCACAGTTAGGGATTCAAATAGGTTCCATCATTTCAGAGATGGGTTTTGCTCCTGTAAGGACTACTGGTAG 2454 0.4209 MNHIKTCTRKNAIHNLNTLGPPPSPKRHLQLDASIIKTGFDPNTCHFNFKVKTHLQRGELGAARQLFDEIPHKNTISTNIMIMGYINSGNLSNARSLFDTMIQRTVVTWTMMIGGYAQNCRFREAFGLFADMYRHETVPDHVTLATLLSGFTEFDSVNEVAQVHAHVVKLGHDSTLMVCNSLLDSYCKTRNVSLACHLFDLMPDKDNVTFNALLTGYSKEGFNHDAIKLFFKMQDLGIRPTEFTFAAVLTAGIQLDDIEFGQQVHGFVVKSNFAWNVFVANALLDFYSKHDRVAEARKFFYEMPEVDGISYNVLITCHAWNGKVDESLVLFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHCQTIVTAAISEILVENSLVDMYAKCDKFGEANRIFANLARQSSVPWTALISAYVQKGLHEDGLKLFIEMQRAKITADSSTYASIGRACANLASLTLGKQLHSHIIRSGYISNVFSGSALVDMYAKCGSIKDALKMFQEMPVRNSVSWNALISAHGQNGDGDLTLRSFEQMVHSGLQPDSVSFLSVLCACSHCGLIEEGLQYFNSMTQMYKLVPKREHYVSIVDMLCRSERFDEAENLMACMPFEPDEIMWTSILNSCRIHKNQELAKKAADQLFNMKALRDAAPYVSMSNIYAAAGEWDNVCKVKKAMRDRGVRKVPAYSWVEIKHKTHVFSANDKSHPQMREIMRKLDELEEQMEKQGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHTAIKVISKIVNREITVRDSNRFHHFRDGFCSCKDYW* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1549 817 Pfam DYW family of nucleic acid deaminases 725 817 IPR032867 GO:0008270
Apr4g1549 817 TIGRFAM PPR: pentatricopeptide repeat domain 484 508 IPR002885 -
Apr4g1549 817 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Apr4g1549 817 TIGRFAM PPR: pentatricopeptide repeat domain 511 545 IPR002885 -
Apr4g1549 817 TIGRFAM PPR: pentatricopeptide repeat domain 178 205 IPR002885 -
Apr4g1549 817 TIGRFAM PPR: pentatricopeptide repeat domain 412 443 IPR002885 -
Apr4g1549 817 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Apr4g1549 817 Gene3D Tetratricopeptide repeat domain 509 752 IPR011990 GO:0005515
Apr4g1549 817 Pfam E+ motif 694 717 IPR046849 -
Apr4g1549 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Apr4g1549 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Apr4g1549 817 Pfam PPR repeat 583 607 IPR002885 -
Apr4g1549 817 Pfam PPR repeat 309 334 IPR002885 -
Apr4g1549 817 Pfam PPR repeat 281 305 IPR002885 -
Apr4g1549 817 Pfam PPR repeat 77 104 IPR002885 -
Apr4g1549 817 Pfam PPR repeat 483 508 IPR002885 -
Apr4g1549 817 Gene3D Tetratricopeptide repeat domain 250 378 IPR011990 GO:0005515
Apr4g1549 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 508 IPR002885 -
Apr4g1549 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Apr4g1549 817 Pfam E motif 626 689 IPR046848 -
Apr4g1549 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Apr4g1549 817 PANTHER - 438 760 - -
Apr4g1549 817 PANTHER - 343 435 - -
Apr4g1549 817 PANTHER - 28 341 - -
Apr4g1549 817 Gene3D Tetratricopeptide repeat domain 26 167 IPR011990 GO:0005515
Apr4g1549 817 Gene3D Tetratricopeptide repeat domain 379 461 IPR011990 GO:0005515
Apr4g1549 817 Coils Coil 707 727 - -
Apr4g1549 817 Pfam PPR repeat family 509 555 IPR002885 -
Apr4g1549 817 Pfam PPR repeat family 105 151 IPR002885 -
Apr4g1549 817 Pfam PPR repeat family 205 250 IPR002885 -
Apr4g1549 817 Pfam PPR repeat family 409 455 IPR002885 -
Apr4g1549 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Apr4g1549 817 PANTHER OS01G0913400 PROTEIN-RELATED 438 760 - -
Apr4g1549 817 PANTHER OS01G0913400 PROTEIN-RELATED 28 341 - -
Apr4g1549 817 PANTHER OS01G0913400 PROTEIN-RELATED 343 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1549 Apr-Chr4 16866039 16868710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1549 58 817 Glycoside Hydrolase AT3G49170 33.677 5.39e-151 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1549 - - gmx:100793014 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1549 4 16866039 16868710 Apr4g1549 4 16866039 16868710 ECH