Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01473 ATGCTCACAACACTAACCAGGGTGTTCAAGCACACCACCCTAGCCAATTTGCTTCAAAAACGCACCAGATTCTATGCAACTATGGTTGGTGAAAGAAGGCTAGAGGGAAAAGTGGCAATCATAACAGGCTCAGCAAGTGGACTTGGCAAGGCCACGGCCCATCACTTTGTCCACCATGGGGCCCAAGTCATCATTGCTGACAATGACACCATCCTTGGCCCACAAGTTGCAAAGGACTTGGGCCCATCAGCCCGTTATGTGGAATGTGATATTGCTGTGGAGGCCCAAGTTGAAGAAGCTGTGAATGTTGCCATGGCCCACTATGGCAAGCTGGACATCATGTACAACAATGCTGGCATCCCAGGCCCATCGGTTCCCCCAAGCATAGCAGATCTAGACCTTGATGAGTTTGACAAAGTCATGAGAATCAACGTAAGGGGAATGCTTGCTGGTATAAAGCATGCAGCCCGGGTGATGGTACCCATGGGCTCAGGCTCCATTCTATGCACATCAAGCATAAGTGGGGTAATGGGTGGGCTTGGGCCTCATCCTTATACCATATCAAAGTTTACAATACCTGGGGTAGTGAAATCTGTGGCCAGTGAGTTATGCAAAGTTGGGGTGAGGATCAATTGCATATCACCAGCTCCAATTCCTACACCTATGGTTTTGGCTCAAATACAAAAGTTTTATCCTGGTTTACCCCAAGAACAGATAGAGGGTATTGTGAATGGTTTTGTTGGGTTAAAAGGTGCTAAGTGTGAGGACATTGATGTGGCAAAGGCTGCATTGTATTTGGCATCAGATGAAGCAAAGTTTATCTCAGGTCACAATCTCATAGTTGATGGAGGCTTCACCAGCTTTAAAACTTTCACATTCCCTTCTCCATAA 891 0.468 MLTTLTRVFKHTTLANLLQKRTRFYATMVGERRLEGKVAIITGSASGLGKATAHHFVHHGAQVIIADNDTILGPQVAKDLGPSARYVECDIAVEAQVEEAVNVAMAHYGKLDIMYNNAGIPGPSVPPSIADLDLDEFDKVMRINVRGMLAGIKHAARVMVPMGSGSILCTSSISGVMGGLGPHPYTISKFTIPGVVKSVASELCKVGVRINCISPAPIPTPMVLAQIQKFYPGLPQEQIEGIVNGFVGLKGAKCEDIDVAKAALYLASDEAKFISGHNLIVDGGFTSFKTFTFPSP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01473 296 Gene3D - 26 292 - -
Vian2g01473 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 286 IPR036291 -
Vian2g01473 296 Pfam Enoyl-(Acyl carrier protein) reductase 43 286 - -
Vian2g01473 296 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 32 289 - -
Vian2g01473 296 FunFam Short-chain dehydrogenase reductase 25 290 - -
Vian2g01473 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
Vian2g01473 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Vian2g01473 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
Vian2g01473 296 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Vian2g01473 296 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Vian2g01473 296 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Vian2g01473 296 PRINTS Glucose/ribitol dehydrogenase family signature 185 204 IPR002347 -
Vian2g01473 296 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Vian2g01473 296 PRINTS Glucose/ribitol dehydrogenase family signature 249 269 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01473 Vian-Chr2 30587446 30590106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01473 34 286 Acyl Lipid Metabolism Gene Families AT1G63380 30.038 1.65e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01473 - - gmx:100808525 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01473 2 30587446 30590106 Vian2g01473 2 30587446 30590106 ECH