Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02382 ATGCTCAGAACACTAGCCAGGGAGTTCAAGCTCACGACCCTGAAAAATGGTTTGCTTCAAAAACACAGCAGATTCTATGCAACAGTTGGTGGAAGAAGGCTAGAGGGAAAAGTAGCACTCATCACTGGGTCAGCAAGTGGACTTGGAAAGGCAACAGCCCATGAATTTGTCCAACATGGGGCCCAAGTCATCATTGCTGACAATGATACAAAGCTTGGGCCACAAGTTGCAAAAGAGTTAGGCCCATCATCTTGCTATGTTGAATGTGATGTCACTGTTGAGGCCCAAATAGCAGAAGCTGTAAACATTGCCATGACCAATTATGGTAAACTTGACATCATGTATAACAATGCTGGCATAACAGGCCCAACAATCCCGCCAAGCATAGCAGATTTAGACCTTGATGAATTTGATAGGGTAATGAAAATCAATGTCAGGGGAATGATTGCAGGTATAAAGCATGCAGCCCGGGTCATGATACCCATGGGCTCCGGGTCCATTCTTTGCACATCAAGCATAAGTGGGATAATGGGTGGGCTTGGGCCTCATCCATATACAATATCAAAGTTTACAATAGCTGGGGTAGTGAAATCTGTGGCCAGTGAGCTATGCAAAGCTGGGATCAGAGTCAATTGCATATCCCCAGCTCCAATTCCTACACCTATGTCCTTGACTCAAATAGGGAAGTTTTTTCCTGGTTTAACCCAAGAACAGATAGTGGGTATTGTGAATGGGCTTAGTGAGCTCAAAGGTGCTAAGTGTGAGGACATTGATGTGGCCCGGGCTGCATTGTATTTGGCATCTGATGAAGCAAAGTTTATCTCAGGTCACAACTTGATTGTGGATGGAGGGTTTACTTGCTTTAAAAATCTTGCTTTCCCTTTTCCAAATCAAACTGTCTAA 903 0.443 MLRTLAREFKLTTLKNGLLQKHSRFYATVGGRRLEGKVALITGSASGLGKATAHEFVQHGAQVIIADNDTKLGPQVAKELGPSSCYVECDVTVEAQIAEAVNIAMTNYGKLDIMYNNAGITGPTIPPSIADLDLDEFDRVMKINVRGMIAGIKHAARVMIPMGSGSILCTSSISGIMGGLGPHPYTISKFTIAGVVKSVASELCKAGIRVNCISPAPIPTPMSLTQIGKFFPGLTQEQIVGIVNGLSELKGAKCEDIDVARAALYLASDEAKFISGHNLIVDGGFTCFKNLAFPFPNQTV* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02382 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
Rops8g02382 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
Rops8g02382 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Rops8g02382 300 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 32 289 - -
Rops8g02382 300 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Rops8g02382 300 PRINTS Glucose/ribitol dehydrogenase family signature 185 204 IPR002347 -
Rops8g02382 300 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Rops8g02382 300 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Rops8g02382 300 PRINTS Glucose/ribitol dehydrogenase family signature 249 269 IPR002347 -
Rops8g02382 300 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Rops8g02382 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 287 IPR036291 -
Rops8g02382 300 Gene3D - 26 293 - -
Rops8g02382 300 Pfam Enoyl-(Acyl carrier protein) reductase 43 286 - -
Rops8g02382 300 FunFam Short-chain dehydrogenase reductase 23 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02382 Rops-Chr8 55159516 55162328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02382 33 286 Acyl Lipid Metabolism Gene Families AT3G55290 32.576 6.30e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02382 - - gmx:100808525 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02382 8 55159516 55162328 Rops8g02382 8 55159516 55162328 ECH