Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2481 ATGAAAGCATGTACCAAGAAAATCTCATGCCGAAGCTTTGCCAAATTGACACATCCAAAACTGCACCTTCATGTCCGAACCCCCATAGACGCTTCCATCATCAAGACAGGCTTCATGCCCCAAACATGCCGTTTCAATTTCCTGATCAGGGCCTGTGTTCAACGGGGCGAATTGCGCCGTGCTCGGAAGCTGTTCGACGGAATGCCTCACAGAAACACCTTCTCTGCTAACATGATGATCATGGGTTACATACAATCTGGCGATCTTGCCACTGCAACTAACTTGTTTGATGGCATGGATGATCGCAATGCTGTTTCCTGGACAATGCTGATTGACGGCTATGCTCAAAACAATAGGTTTCGTGAAGCCTTTGGTCTTTTTGTTGAGATGTGTAGGCATGGAGTTGAACCAGATTATGTTACATTTTCCACTCTCTTATCTGGGTTCACTGAGTTCAATTCTGTCAATGAAGTAACCCAGGTTCATGCCTATGTCGTTAAGTTGGGGCATAATTCGGCCATGGTAGTTTCCAACTCATTGCTTGATTCTTACTGTAAAACCCGCAGCCTTGGGTTAGCTTGTCAGCTGTTTGAGCACATGCCTATGAAGGATTCTGTCACTTACAATGCATTAATGGCAGGGTATTCGAAAGAGAGGTTGAATCAGGAGGCCTTAAACCTGTTCTTCAGGATGCAGGATTTGGAGTTTAAGCCTACAGAATTTACTTTTGCTACAGTTTTGTGTTGCGGGATACAGTTGGATGATATAGAATTTGGGCAACAGGTTCACAGTCTTCTGCTGAAGACTAATTTTGTGTGGAATGTGTTCGTGGCAAATGCTTTGCTTGATTTCTACTCGAAGCATGACCGGGTTGCTGAAGCACAGAAACTTTTTAATGAGATGCCAGAGTTGGATGGCATCTCTTACAATGTACTTATCACATGTTATGTGTGGAACGGAAGATTCAAAGAATCTATTGAACTATTCAGGGAGTTACACCTCACTAGATTTAACAGAAGGCAATTCCCATATGCTACGTTGCTGAGCATGGCTGCAAATGCATCGAACCTGGAAATGGGTAGGCAAATTCATTCCCAGGCTATTGTAACAGCAGCCATTTCAGACGATATGATTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAGATTTGGGGAAGCAAATAGGATTTTTGCAAATTTGGCTCTTCAAAGTTCAGTTCCATGGACAGCTCTGATCTCGGGTAATGTTCAGAAGGGACACCCTGAAGAAGGTATAAAGCTATTCATTGAGATGCAAAGAGCTGAAAAGACTGCAGATGCAGCTACCTATGCCAGCATCCTAAAAGCCTGTGCAAATTTAGCCTCACAGGCTCTGGGAAAGCAGTTACACTCGCACATAATTAGATCAGGATGCCTTTCAAATGTATTTTCTGGGAGTGCACTGCTTGACATGTATGCGAAATGTGGATCCATCGAAAATGCACTTCAAATGTTTCAAGAGATGCCAGTTAGGAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAATGGAGATGGTGAAAATACTCTTAGGTCATTTGAACAAATGGTTCATTCAGGTCTGAAACCAAATGCTGTTAGTTTCCTTAGTGTGCTTTGTGCATGCAGCCATTGTGGTCTAGTTGAAGAAGGATTGCAATACTTCAACTCCATGACTCAAATATATGAAGTTACTCCTAAACGAGAGCATTATACTTCAATGGTCGATATGCTTTGTCGGAGTGGGAGATTCGAGGAGGCAGTGAAAATGATGGCTCAGATGCCTTTTGAACCTGATGAAATAATGTGGTCATCGGTTCTAAACTCCTGCAGAATCCATAAAAATCAAGAGTTGGCAAAGAAAGCAGCAGACCAATTATTTAGCATGAAGGAGCTCAGAGATGCTGCTCCATATGTTAGCATGGCCAATATATATGCAGAAGTTGGTGAATGGGAAAATGTAGGGAAGGTGAAGACGGCCATGAGAAGCCGAGGAATTAGAAAAGTGCCGGCTTACAGTTGGGTCGAGATCAAACACAAAACTCATATTTTTTCAGCAAATAACAAGTCTCACCCACAAATGAAAGAGATCACAAGGAAGCTTGATGATCTGGAGGAGCAAATGGAGAAAGAAGGGTACAAGCCTGACTTAAGCTGTGCCCTTCACAATGAGGATAACGAACTGAAGGCAGAATCCCTTAAATATCACAGTGAACGCATTGCCATTGCATATGCACTGATCAGCACCTCAGAAGGGTCACCGATTGTAGTAATGAAGAATATAAGAGCTTGTACAAATTGCCATGCTGCAATCAAGGCAATATCCAAGATAGTTGGTAGGGAAATCACAGTGAGAGATTCAAGTAGGTTCCATCATTTCAGAGATGGAATCTGCTCCTGTAGGGACTACTGGTAG 2448 0.4273 MKACTKKISCRSFAKLTHPKLHLHVRTPIDASIIKTGFMPQTCRFNFLIRACVQRGELRRARKLFDGMPHRNTFSANMMIMGYIQSGDLATATNLFDGMDDRNAVSWTMLIDGYAQNNRFREAFGLFVEMCRHGVEPDYVTFSTLLSGFTEFNSVNEVTQVHAYVVKLGHNSAMVVSNSLLDSYCKTRSLGLACQLFEHMPMKDSVTYNALMAGYSKERLNQEALNLFFRMQDLEFKPTEFTFATVLCCGIQLDDIEFGQQVHSLLLKTNFVWNVFVANALLDFYSKHDRVAEAQKLFNEMPELDGISYNVLITCYVWNGRFKESIELFRELHLTRFNRRQFPYATLLSMAANASNLEMGRQIHSQAIVTAAISDDMIGNSLVDMYAKCDRFGEANRIFANLALQSSVPWTALISGNVQKGHPEEGIKLFIEMQRAEKTADAATYASILKACANLASQALGKQLHSHIIRSGCLSNVFSGSALLDMYAKCGSIENALQMFQEMPVRNSVSWNALISAYAQNGDGENTLRSFEQMVHSGLKPNAVSFLSVLCACSHCGLVEEGLQYFNSMTQIYEVTPKREHYTSMVDMLCRSGRFEEAVKMMAQMPFEPDEIMWSSVLNSCRIHKNQELAKKAADQLFSMKELRDAAPYVSMANIYAEVGEWENVGKVKTAMRSRGIRKVPAYSWVEIKHKTHIFSANNKSHPQMKEITRKLDDLEEQMEKEGYKPDLSCALHNEDNELKAESLKYHSERIAIAYALISTSEGSPIVVMKNIRACTNCHAAIKAISKIVGREITVRDSSRFHHFRDGICSCRDYW* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2481 815 Pfam PPR repeat 581 605 IPR002885 -
Amo06g2481 815 Pfam DYW family of nucleic acid deaminases 723 815 IPR032867 GO:0008270
Amo06g2481 815 Pfam E motif 624 687 IPR046848 -
Amo06g2481 815 Coils Coil 705 725 - -
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Amo06g2481 815 Pfam PPR repeat 45 71 IPR002885 -
Amo06g2481 815 Pfam PPR repeat 75 102 IPR002885 -
Amo06g2481 815 Pfam PPR repeat 279 303 IPR002885 -
Amo06g2481 815 Pfam PPR repeat 481 506 IPR002885 -
Amo06g2481 815 Pfam PPR repeat 307 332 IPR002885 -
Amo06g2481 815 Pfam PPR repeat family 507 553 IPR002885 -
Amo06g2481 815 Pfam PPR repeat family 407 454 IPR002885 -
Amo06g2481 815 Pfam PPR repeat family 103 149 IPR002885 -
Amo06g2481 815 Pfam PPR repeat family 203 248 IPR002885 -
Amo06g2481 815 PANTHER - 342 433 - -
Amo06g2481 815 PANTHER - 439 758 - -
Amo06g2481 815 PANTHER - 26 340 - -
Amo06g2481 815 Gene3D Tetratricopeptide repeat domain 32 167 IPR011990 GO:0005515
Amo06g2481 815 Gene3D Tetratricopeptide repeat domain 375 457 IPR011990 GO:0005515
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 506 IPR002885 -
Amo06g2481 815 Gene3D Tetratricopeptide repeat domain 248 374 IPR011990 GO:0005515
Amo06g2481 815 Gene3D Tetratricopeptide repeat domain 574 752 IPR011990 GO:0005515
Amo06g2481 815 Gene3D Tetratricopeptide repeat domain 458 573 IPR011990 GO:0005515
Amo06g2481 815 PANTHER OS01G0913400 PROTEIN-RELATED 439 758 - -
Amo06g2481 815 PANTHER OS01G0913400 PROTEIN-RELATED 26 340 - -
Amo06g2481 815 PANTHER OS01G0913400 PROTEIN-RELATED 342 433 - -
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 608 IPR002885 -
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Amo06g2481 815 TIGRFAM PPR: pentatricopeptide repeat domain 509 543 IPR002885 -
Amo06g2481 815 TIGRFAM PPR: pentatricopeptide repeat domain 307 333 IPR002885 -
Amo06g2481 815 TIGRFAM PPR: pentatricopeptide repeat domain 582 606 IPR002885 -
Amo06g2481 815 TIGRFAM PPR: pentatricopeptide repeat domain 482 506 IPR002885 -
Amo06g2481 815 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Amo06g2481 815 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Amo06g2481 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2481 Amo-Chr6 87213557 87218421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2481 35 815 Glycoside Hydrolase AT3G49170 33.913 6.62e-157 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2481 - - gmx:100793014 1280