Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1629 ATGAGGAAACCATACGTGAGGACCATTGCTACTCTAAGAGCTCCGCAATCACCAAGACCGCACCTTCAAGCTGAGAACTCTCTAGATGCTTTTTCCGTTAAGACTGGCTTCGATCCCAACACTTGCCGTTCAAATTTCCAGGTCAAGAACTCTATCCGACGAGGGGATTTGGGATTAGCCCGTAAGCTGTTTGATAAAATGCCTCATCAGAATACCGTCTCCAAAAATATGATGATCGCGGGGTACATAAAAGCGGGCAGTCTTTCTAGCGCTAGGCAGTTGTTTGATACCATGACTGAACGTACGGCAGTTACCTGGACTATCCTGATCGGTGCATATTCTCAGAACAATCAGTGCAGTGAAGCTTTTAGCCTTTTTGGTCAGATGTGTCGATGGGGTACACACGCAGATTATATTACCTTTGCCACTCTCTTATCTGGATTCAATGAGTCTGACTCTGTGTACCAAGTACAACAAGTTCATGCCCATATTGTTAAATTGGGGTATGATTCAACCCTAATGGTTTGCAACTCCTTGCTCGATTCTTACTGTAAAACCCGTTGTCTTGGTTTAGCTTGTCATCTGTTCACCCATATGCCTGATAAGGATTCTGTCTCTTTCAATGCATTATTGACAGGGCTCACAAAAGATGGATTGAATCAAGAAGCTATCAGTCTCTTTTTTGATATGCAGAAATTGGGTTTTAGACCGACGGAATTTACTTTTGCGGCTATTTTATGCACAGGCATTGCATTGGATCACACTGTATTTGGGCAACAAATTCATGGTCTTGTAGTGAAGACCAATTTTGTCTGGAATGTGTTTGTCGCTAATGCATTGCTTGATTTCTACTCGAAGCATGACTGTGTTGCAGAAGTAAGGAAGCTTTTTTATGAGATGCCAGAATTGGATGGTATCTCTTACAATGTACTCATTACATGTCATGCTTGGAATGACCAACTCAAAGAATCTCTTGATCTTTTCCGGGAATTACAGTTTACTAAATTTGACCGGAGGCAATTCCCATTTGCAACCATATTGAGCATAGCTGCAAATACTCTAAACCTGGAAATGGGCAGGCAAATTCATTCCCAAGCTATTGTGACAGCTGCTGATTCAGAAATTCTTGTTGGGAACTCTTTGGTTGACATGTATGCTAAGTGTGACAAATTTGATGAAGCAAATAGGATTTTTTCAAATCTGACTTATCAAAGTTCTGTTCCTTGGACAGCTTTGATCTCAGCTTATGTTCAGAAAGGATTCAATGAAGAAGCCCTGAATCTATTCATTGAGATGCACAGAGCCAAAAAAAGTGCTGATTCAGCCACTTTTGCCAGCATCTTGAGAGCCTGTGCAAGCTTAGCCTCACTCTCGCTGGGAAAACAGTTGCACTCGTTTATAATGAGATCCGGCTACATTTCAAATGTATTCTCTGGAAGTGCACTCCTTGACATGTATGCAAAATGTGGATCCATAAAAGATACACTTCAAATGTTTCAAGAGATGCCTGTCAGGAATTCAGTTTCTTGGAATGCACTGATATCAGCTCATGCACAAAACGGAGATGGTGACCTTGCTCTTAGATCGTTCGAACAAATGGTTCATTCAGGTTTGCAACCAAATTCAGTTAGCTTCCTTAGTGTTCTGTGTGCCTGCAGCCACTGTGGTCTAGTTGAAGAAGGATCTAAGTACTTTAACTCCATGACTCAAACTTATAAACTTGTCCCAAGAAGAGAACATTATGCATCAATGGTTGACATGTTGTGTAGGAGTGGAAAGTTTGACGAGGCTGAGAGACTGATGACTCAGATGCCTTTTGAACCTGATGAAATAATGTGGACATCAATTCTCAATTCATGTAGAATTCATAAGAATCAAGAGTTAGCAAAGAAAGCAGCAGACCAACTATTCAATATGAAGGTGCTTAGAAATGCTGCTCCATATGTCAGCATGTCCAATATCTATGCAGCAGCTGGTCAATGGGACAGCGTAGGGAAGGTCAAGAAAGCTATGAGAGAGCGAGGAATTAGAAAGCTCCCAGCTTACAGTTGGGTTGAAGTTAAACACAAAATTCATGTTTTCTCAGCCAATGATGAGAATCACCCACAAAGGGAAGAGATCATGAAGAAGATTGATGAGCTGGCGGAGCAAATGGAGAAAGAAGGGTACAAACCTGACCCAAATTGTACCCTTCACGATGTGGATGAGGAACAAAAGATAGAGTCTCTTAAATATCACAGTGAACGTATTGCCATTGCTTTTGCACTGATTAGCACACCAGAAGGGACACCTATTCTGGTTATGAAGAACCTCCGAGCTTGTACTGACTGCCATGCTGCCATCAAGGTGATCTCCAAGATAGTTAAAAGGGAAATCACAGTCAGAGATTCAAGTAGGTTTCATCATTTCAGAAATGGCCATTGCTCGTGTGGGGATTACTGGTAG 2445 0.4168 MRKPYVRTIATLRAPQSPRPHLQAENSLDAFSVKTGFDPNTCRSNFQVKNSIRRGDLGLARKLFDKMPHQNTVSKNMMIAGYIKAGSLSSARQLFDTMTERTAVTWTILIGAYSQNNQCSEAFSLFGQMCRWGTHADYITFATLLSGFNESDSVYQVQQVHAHIVKLGYDSTLMVCNSLLDSYCKTRCLGLACHLFTHMPDKDSVSFNALLTGLTKDGLNQEAISLFFDMQKLGFRPTEFTFAAILCTGIALDHTVFGQQIHGLVVKTNFVWNVFVANALLDFYSKHDCVAEVRKLFYEMPELDGISYNVLITCHAWNDQLKESLDLFRELQFTKFDRRQFPFATILSIAANTLNLEMGRQIHSQAIVTAADSEILVGNSLVDMYAKCDKFDEANRIFSNLTYQSSVPWTALISAYVQKGFNEEALNLFIEMHRAKKSADSATFASILRACASLASLSLGKQLHSFIMRSGYISNVFSGSALLDMYAKCGSIKDTLQMFQEMPVRNSVSWNALISAHAQNGDGDLALRSFEQMVHSGLQPNSVSFLSVLCACSHCGLVEEGSKYFNSMTQTYKLVPRREHYASMVDMLCRSGKFDEAERLMTQMPFEPDEIMWTSILNSCRIHKNQELAKKAADQLFNMKVLRNAAPYVSMSNIYAAAGQWDSVGKVKKAMRERGIRKLPAYSWVEVKHKIHVFSANDENHPQREEIMKKIDELAEQMEKEGYKPDPNCTLHDVDEEQKIESLKYHSERIAIAFALISTPEGTPILVMKNLRACTDCHAAIKVISKIVKREITVRDSSRFHHFRNGHCSCGDYW 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1629 814 TIGRFAM PPR: pentatricopeptide repeat domain 76 101 IPR002885 -
Sto8g1629 814 TIGRFAM PPR: pentatricopeptide repeat domain 175 203 IPR002885 -
Sto8g1629 814 TIGRFAM PPR: pentatricopeptide repeat domain 104 134 IPR002885 -
Sto8g1629 814 TIGRFAM PPR: pentatricopeptide repeat domain 205 239 IPR002885 -
Sto8g1629 814 TIGRFAM PPR: pentatricopeptide repeat domain 508 541 IPR002885 -
Sto8g1629 814 TIGRFAM PPR: pentatricopeptide repeat domain 581 604 IPR002885 -
Sto8g1629 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Sto8g1629 814 PANTHER OS01G0913400 PROTEIN-RELATED 25 338 - -
Sto8g1629 814 PANTHER OS01G0913400 PROTEIN-RELATED 340 432 - -
Sto8g1629 814 PANTHER OS01G0913400 PROTEIN-RELATED 436 757 - -
Sto8g1629 814 Pfam DYW family of nucleic acid deaminases 722 814 IPR032867 GO:0008270
Sto8g1629 814 Pfam PPR repeat family 103 148 IPR002885 -
Sto8g1629 814 Pfam PPR repeat family 506 552 IPR002885 -
Sto8g1629 814 Pfam PPR repeat family 202 246 IPR002885 -
Sto8g1629 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 101 IPR002885 -
Sto8g1629 814 Pfam E motif 623 686 IPR046848 -
Sto8g1629 814 Gene3D Tetratricopeptide repeat domain 457 573 IPR011990 GO:0005515
Sto8g1629 814 Gene3D Tetratricopeptide repeat domain 574 750 IPR011990 GO:0005515
Sto8g1629 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Sto8g1629 814 PANTHER - 436 757 - -
Sto8g1629 814 PANTHER - 25 338 - -
Sto8g1629 814 PANTHER - 340 432 - -
Sto8g1629 814 Pfam PPR repeat 581 604 IPR002885 -
Sto8g1629 814 Pfam PPR repeat 278 302 IPR002885 -
Sto8g1629 814 Pfam PPR repeat 306 331 IPR002885 -
Sto8g1629 814 Pfam PPR repeat 379 399 IPR002885 -
Sto8g1629 814 Pfam PPR repeat 74 101 IPR002885 -
Sto8g1629 814 Pfam PPR repeat 480 505 IPR002885 -
Sto8g1629 814 Pfam PPR repeat 408 434 IPR002885 -
Sto8g1629 814 Gene3D Tetratricopeptide repeat domain 200 249 IPR011990 GO:0005515
Sto8g1629 814 Gene3D Tetratricopeptide repeat domain 250 370 IPR011990 GO:0005515
Sto8g1629 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 607 IPR002885 -
Sto8g1629 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Sto8g1629 814 Gene3D Tetratricopeptide repeat domain 23 159 IPR011990 GO:0005515
Sto8g1629 814 Gene3D Tetratricopeptide repeat domain 371 456 IPR011990 GO:0005515
Sto8g1629 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1629 Sto-Chr8 10464428 10466872 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1629 53 814 Glycoside Hydrolase AT3G49170 33.848 4.83e-151 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1629 - - gmx:100793014 1271.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1629 8 10464428 10466872 Sto8g1629 8 10464428 10466872 ECH