Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00753 ATGAATTACGTAAAAGCATGTACGAGGATAAACGGCATCGGAACTTTGGCATCTCCAAAACGACACTTTCAGGTCGATGCTTCCATCATCAAGACAGGCTTCGACCCCACAACGTACCGTTCCAATTTCCAGGTGAAGACTCTTCTACAACGTGGGGATTTGGATGCAGCACTCAAACTGTTCGACGAAATGCCTCACAAGAACACCATCTCCACCAACACCATGATCATGGGTTACATCAACTCTGGCAATCTTTCCACTGCTAGGAGCATGTTTGACAGCATGCTTCACCGCACGGTTGTTACATGGACAATGCTGATCGGTGGCTATGCTCAGAACAACCAGTTCCGTGAAGCCTTTGGTCTCTTCGCTGAAATGTGCAGGCATGGCACGGTTCCGGATCGTGTCACCTTGGCCACTCTCTTGTCTGGGTTCACTGAATTTGAAAGTGTCAATGAAGTGGGACAAGTGCATGCCCAGGTTGTCAAGTCAGGGTATGATTCCACCCTCATGATTTGCAACTCTTTGCTTGATTCTTACTGTAAGACGCGTAACCTTGGCTTGGCTTGTCACCTCTTCAAGCAAATGCTGGAAAAAGACACTGTCACTTTCAATGCATTGTTGACGGGGTACTCCAAAGAGGGGTTCAATCATGATGCCATAAACCTATTTTTCAAGATGCAGGATTTGGGGCTTAGGCCAACAGAATTTACTTTTGCTGCGGTTTTAACTGCAGGGATACAGTTGGATGATATAGAATTTGGGCAACAAGTTCACAGTTTTTTGGTGAAGTGTAATTTTGTGTGGAATGTGTTTGTGGCTAATGCTTTGCTTGATTTCTACTCTAAGCATGACCGTGTTGTTGAAGCTAGTAAACTTTTTGATGAGATGCCGGAGGTGGATGGTATCTCTTACAATGTGCTTGTCACATGCTATGCATGGAATGGAAGAATGGAAGAATCTCTTGAACTTTTCAGGGAGTTACAGTATACTAGATTTGACCGGAGGCAATTCCCATTTGCTACCTTGTTAAGTATCGCTGCAAATGCTTTGAGCCTGGAAATGGGTAGGCAAATCCATTCCCAGACTTTAGTAACAAATGCCATTTCAGACAGTCTGGTTGGAAATGCTGTGGTTGACATGTATGCTAAATGTGGCAAATTTGGGGAAGCAAAGAGGATTTTTGCAGATCTGGCTCATCAAAGTTCAGTTACATGGACAGCCCTGATCTCGGGTTATGTTCAGAAGGGACTCCATGAAGATGGCCTAAAGCTATTCATTGAGATGCAAAGAGCCAAAATAAGTGCTGACTCGGCTACTTATGCCAGCATCTTAAGAGCCTGTGCGAATCTAGCTTCACTGACACTGGGAAAACAGATACAGTCTCATATTATCATATCCGGATGCTTTTCAAATGTTTTTTCCGGGAGTGCACTGGTTGACATGTATGCAAAATGTGGATCAATAAAAGATGCACTTCAAATGTTTCAAGAGATGCCTGTGAGGAATTCTGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAACGGAGACGGCGACCATGCTCTTAGATCATTTGAGCAAATGGTTAATTCAGGTCTGCAACCAAATTCCGTTAGCTTCCTTAGCATTTTATGTGCCTGCAGCCACTGTGGTCTAGTTGAAGAAGGACTACGGTACTTTAACTCCATGACTCAAGTGTATAAACTTGTACCAAGAAGAGAGCATTACGCATCAATGGTTGATATGCTATGTCGCAGTGGAAGATTTGATGAGGCTGAGAAATTGATGGCTCTGATGCCTTTTGAAGCGGATGAGGTAATGTGGACATCAGTTCTCAACTCATGCAGGATCCATAAGAATCAAGAGTTGGCAAAGAAAGCAGCAGACAAACTATTCAATATGGAGGTCCTTAGAAATGCTGCTCCATATGCTAGCATGTCCAATATCTATGCAGCAGTTGGTGAATGGGAGAATGTGGGAAAGGTGAAGAAGGCAATGAGAGAGCGAGGGGTTAGAAAGGTGCCAGGATACAGTTGGGTTGAAATCAAACAGAAGACACATGTTTTCTCAGCCAATGACATGTCTCACCCACAGATGAAAGAGATAACGAGGAAGCTTGATGAACTGGAAGAGCAAATGGAGAAACAAGGGTATAAACCTGACTCAAGTTGTGCCCTTCACGATGTGGACGAGGAAGTCAAGTTAGAGTCACTAAAATATCATAGTGAACGCATTGCCATTGCCTTTGCTCTCATTAGCACCCCAGAAGGGTCACCCATATTGGTATTGAAGAACCTAAGAGCCTGTAACAATTGCCATGCTGCCATCAAGGTAATCTCCAAGATTGTAAACCGGGAAATCACCGTCAGAGATTCAAGTAGATTCCATCACTTCAGAGATGGATCTTGTTCCTGTAAGGACTACTGGTAG 2436 0.4388 MNYVKACTRINGIGTLASPKRHFQVDASIIKTGFDPTTYRSNFQVKTLLQRGDLDAALKLFDEMPHKNTISTNTMIMGYINSGNLSTARSMFDSMLHRTVVTWTMLIGGYAQNNQFREAFGLFAEMCRHGTVPDRVTLATLLSGFTEFESVNEVGQVHAQVVKSGYDSTLMICNSLLDSYCKTRNLGLACHLFKQMLEKDTVTFNALLTGYSKEGFNHDAINLFFKMQDLGLRPTEFTFAAVLTAGIQLDDIEFGQQVHSFLVKCNFVWNVFVANALLDFYSKHDRVVEASKLFDEMPEVDGISYNVLVTCYAWNGRMEESLELFRELQYTRFDRRQFPFATLLSIAANALSLEMGRQIHSQTLVTNAISDSLVGNAVVDMYAKCGKFGEAKRIFADLAHQSSVTWTALISGYVQKGLHEDGLKLFIEMQRAKISADSATYASILRACANLASLTLGKQIQSHIIISGCFSNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDHALRSFEQMVNSGLQPNSVSFLSILCACSHCGLVEEGLRYFNSMTQVYKLVPRREHYASMVDMLCRSGRFDEAEKLMALMPFEADEVMWTSVLNSCRIHKNQELAKKAADKLFNMEVLRNAAPYASMSNIYAAVGEWENVGKVKKAMRERGVRKVPGYSWVEIKQKTHVFSANDMSHPQMKEITRKLDELEEQMEKQGYKPDSSCALHDVDEEVKLESLKYHSERIAIAFALISTPEGSPILVLKNLRACNNCHAAIKVISKIVNREITVRDSSRFHHFRDGSCSCKDYW 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00753 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Cca07g00753 811 PANTHER OS01G0913400 PROTEIN-RELATED 431 754 - -
Cca07g00753 811 PANTHER OS01G0913400 PROTEIN-RELATED 337 429 - -
Cca07g00753 811 PANTHER OS01G0913400 PROTEIN-RELATED 23 335 - -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 101 134 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 478 502 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 172 200 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 71 97 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 505 538 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 275 299 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 578 601 IPR002885 -
Cca07g00753 811 TIGRFAM PPR: pentatricopeptide repeat domain 404 437 IPR002885 -
Cca07g00753 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Cca07g00753 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 502 IPR002885 -
Cca07g00753 811 Coils Coil 701 721 - -
Cca07g00753 811 Pfam E+ motif 688 711 IPR046849 -
Cca07g00753 811 Gene3D Tetratricopeptide repeat domain 17 153 IPR011990 GO:0005515
Cca07g00753 811 Gene3D Tetratricopeptide repeat domain 332 464 IPR011990 GO:0005515
Cca07g00753 811 Gene3D Tetratricopeptide repeat domain 478 709 IPR011990 GO:0005515
Cca07g00753 811 Pfam PPR repeat 376 396 IPR002885 -
Cca07g00753 811 Pfam PPR repeat 303 329 IPR002885 -
Cca07g00753 811 Pfam PPR repeat 578 601 IPR002885 -
Cca07g00753 811 Pfam PPR repeat 49 67 IPR002885 -
Cca07g00753 811 Pfam PPR repeat 275 299 IPR002885 -
Cca07g00753 811 Pfam PPR repeat 71 97 IPR002885 -
Cca07g00753 811 Pfam PPR repeat 477 502 IPR002885 -
Cca07g00753 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Cca07g00753 811 Pfam PPR repeat family 402 450 IPR002885 -
Cca07g00753 811 Pfam PPR repeat family 503 549 IPR002885 -
Cca07g00753 811 Pfam PPR repeat family 199 244 IPR002885 -
Cca07g00753 811 Pfam PPR repeat family 99 145 IPR002885 -
Cca07g00753 811 Gene3D Tetratricopeptide repeat domain 255 331 IPR011990 GO:0005515
Cca07g00753 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Cca07g00753 811 PANTHER - 23 335 - -
Cca07g00753 811 PANTHER - 337 429 - -
Cca07g00753 811 PANTHER - 431 754 - -
Cca07g00753 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 199 IPR002885 -
Cca07g00753 811 Pfam E motif 620 683 IPR046848 -
Cca07g00753 811 Pfam DYW family of nucleic acid deaminases 719 811 IPR032867 GO:0008270
Cca07g00753 811 Gene3D Tetratricopeptide repeat domain 154 254 IPR011990 GO:0005515
Cca07g00753 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00753 Cca-Chr7 11710935 11713829 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00753 56 811 Glycoside Hydrolase AT3G49170 35.019 7.75e-159 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00753 - - gmx:100793014 1435.62