Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00444 ATGAATCACATAAAATCATGTACGAGGAACCTCGGCGCCTTGACATCTTCTCCAAAGCGACACCTTTATGTCGACGCTTCCATGATCAAGACAGGCTTCGATCCCAACACGTACCGTTACAATTTCCAAGTTCAGATCCACCTCCAACGTGGGGATTTGGGCGCTGCACGCAAACTGTTCGACGAAATGCCTCACAAGAACGTCATCTCCACCAACACAATGATAATGGGTTACATAAAATCTGGCAACCTTTCCACTGCCAGGAGCTTGTTTGACAGCATGGTTCAACGCTCGGTTGTTACGTGGACAATGCTGATCGGTGGCTATGCTCAGAACAACCGGTTCCCCGAAGCTTTCGGTCTCTTTGCCGATATGTGTAGACACGGAACGGTTCCGGATCATATCATCTTGGCCACTCTCTTATCTGGGTTCACTGAGTTTGAATCTGTCAACGAAGTGGCACAAGTGCATGCCCATGTTGTCAAATTGGGGTATATTTCCACCCTCATGGTTTGCAACTCGTTGCTTGATTCTTACTGTAAGACGCGTAGCCTTGGATTGGCCTGTCAACTCTTCGAGCATATGCCAGAGAAAGATAATGTTACTTTCAATGCATTGTTGATGGGATACTCCAAAGAGGGATTCAATCATGATGCCATAAACCTGTTTTTCAAGATGCAGGATTTGGGATTTAGGCCCTCGGAATTTACTTTTGCTGCAGTTTTAACTGCAGGGATACAGTTGGATGATATAGAGTTTGGGCAACAAGTTCACAGTTTTGTGGTGAAGTGTAATTTTGTGTGGAATGTGTTTGTGGCTAATTCTTTGCTTGATTTCTACTCGAAGCATGATCGGATTGTTGAGGCAAGGAAGCTTTTTGATGAGATGCCAGAGGTGGATGGTATCTCTTACAATGTGCTCATCACGTGTTGTGCATGGAATGGCAGAGTTGAAGAATCTCTTGAACTTTTCAGGGAGTTACAGTTTACTAGATTTGACCGGAGGCAGTTCCCTTTTGCTACCTTGTTGAGCATTGCTGCAAATGCTTTGAATCTGGAAATGGGTAGGCAAATCCATTCCCAGGCTATTGTAACAGAAGCCATTTCAGAAATTCTAGTTAGGAATTCGTTAGTTGACATGTACGCTAAATGTGACAAATTTGGGGAAGCAAATAGGATTTTTGCAGATCTGGCACATCAAAGTTCAGTTCCATGGACAGCCTTGATCTCGGGTTATGTTCAGAAGGGACTCCATGAAGATGGCCTAAAGCTATTCGTTGAGATGCAAAGAGCCAAAATAGGTGCTGACTCGGCCACTTATGCCAGCATTTTAAGAGCCTGTGCAAATCTAGCTTCACTGACACTAGGAAAACAGTTACACTCACATATAATCAGATCAGGATGCATTTCAAATGTATTTTCTGGGAGTGCACTGGTTGACATGTATGCAAAATGTGGATCCATAAAAGATGCACTTCAAATGTTTCAAGAGATGCCTGTGAAGAACTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAACGGAGACGGTGGCCATGCTCTTAGATCATTTGAACAGATGGTTCATTCAGGTCTGCAACCAACTTCCGTTAGCTTCCTTAGCATTCTATGTGCCTGCAGCCATTGTGGTCTAGTTGAAGAAGGACAACAGTACTTTAACTCTATGGCTCAAGATTACAAACTTGTACCCAGAAAAGAGCATTATGCATCAATTGTTGATATGTTATGTCGCAGTGGAAGATTTGATGAGGCTGAGAAATTGATGGCTCAGATGCCATTTGAACCGGATGAGATAATGTGGTCATCAATTCTCAACTCATGCAGTATCCATAAGAATCAAGAGTTGGCAAAGAAAGCAGCAGACCAACTATTCAATATGAAGGTCCTTAGAGATGCTGCACCATATGTTAGCATGTCCAATATCTATGCAGCAGCTGGTGAATGGAACAATGTGGGAAAGGTGAAGAAGGCCATGAGAGAGCGAGGGGTTAGAAAGGTCCCGGCATACAGTTGGGTTGAAATCAAACAGAAGACCCATGTTTTCTCAGCCAATGACACGTCTCACCCACAGATGAAAGAGATAACGAGGAAGCTTGACGAACTGGAAAAGCAAATGGAGGAACAAGCGTATAAACCTGACTCAGGCTGTGCCCTTTACAATGTGGACGAGGAAGTCAAGGTAGAGTCACTAAAATATCATAGTGAACGCATTGCCATTGCGTTCGCACTAAGGGTCACCCGTATTGGTGATGAAGAACCTACGAGCTtgtga 2298 0.4378 MNHIKSCTRNLGALTSSPKRHLYVDASMIKTGFDPNTYRYNFQVQIHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYIKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQNNRFPEAFGLFADMCRHGTVPDHIILATLLSGFTEFESVNEVAQVHAHVVKLGYISTLMVCNSLLDSYCKTRSLGLACQLFEHMPEKDNVTFNALLMGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQLDDIEFGQQVHSFVVKCNFVWNVFVANSLLDFYSKHDRIVEARKLFDEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANALNLEMGRQIHSQAIVTEAISEILVRNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMQRAKIGADSATYASILRACANLASLTLGKQLHSHIIRSGCISNVFSGSALVDMYAKCGSIKDALQMFQEMPVKNSVSWNALISAYAQNGDGGHALRSFEQMVHSGLQPTSVSFLSILCACSHCGLVEEGQQYFNSMAQDYKLVPRKEHYASIVDMLCRSGRFDEAEKLMAQMPFEPDEIMWSSILNSCSIHKNQELAKKAADQLFNMKVLRDAAPYVSMSNIYAAAGEWNNVGKVKKAMRERGVRKVPAYSWVEIKQKTHVFSANDTSHPQMKEITRKLDELEKQMEEQAYKPDSGCALYNVDEEVKVESLKYHSERIAIAFALRVTRIGDEEPTSL 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00444 765 PANTHER OS01G0913400 PROTEIN-RELATED 23 334 - -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Gma16g00444 765 PANTHER OS01G0913400 PROTEIN-RELATED 432 741 - -
Gma16g00444 765 Pfam PPR repeat family 501 548 IPR002885 -
Gma16g00444 765 Pfam PPR repeat family 98 143 IPR002885 -
Gma16g00444 765 Pfam PPR repeat family 402 449 IPR002885 -
Gma16g00444 765 Pfam PPR repeat family 198 243 IPR002885 -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Gma16g00444 765 Pfam E+ motif 687 714 IPR046849 -
Gma16g00444 765 Coils Coil 700 720 - -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 603 IPR002885 -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 198 IPR002885 -
Gma16g00444 765 Gene3D Tetratricopeptide repeat domain 453 569 IPR011990 GO:0005515
Gma16g00444 765 Gene3D Tetratricopeptide repeat domain 570 747 IPR011990 GO:0005515
Gma16g00444 765 Gene3D Tetratricopeptide repeat domain 249 369 IPR011990 GO:0005515
Gma16g00444 765 Gene3D Tetratricopeptide repeat domain 5 97 IPR011990 GO:0005515
Gma16g00444 765 Pfam PPR repeat 576 600 IPR002885 -
Gma16g00444 765 Gene3D Tetratricopeptide repeat domain 145 248 IPR011990 GO:0005515
Gma16g00444 765 Gene3D Tetratricopeptide repeat domain 370 452 IPR011990 GO:0005515
Gma16g00444 765 Pfam E motif 619 682 IPR046848 -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 97 IPR002885 -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Gma16g00444 765 PANTHER OS01G0913400 PROTEIN-RELATED 336 428 - -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 70 99 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 100 133 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 504 537 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 274 298 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 171 198 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 577 601 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 405 436 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 477 500 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 201 235 IPR002885 -
Gma16g00444 765 TIGRFAM PPR: pentatricopeptide repeat domain 302 328 IPR002885 -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 501 IPR002885 -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Gma16g00444 765 PANTHER - 432 741 - -
Gma16g00444 765 Pfam PPR repeat 274 298 IPR002885 -
Gma16g00444 765 Pfam PPR repeat 302 327 IPR002885 -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Gma16g00444 765 PANTHER - 23 334 - -
Gma16g00444 765 PANTHER - 336 428 - -
Gma16g00444 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 299 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00444 Gma-Chr16 4768729 4771026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00444 51 752 Glycoside Hydrolase AT3G49170 32.218 1.74e-125 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00444 - - gmx:100793014 1392.48