Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03287 ATGTTGAGAACACTAGCAAGGGAGTTGAAGATGAGCCACATGAGCAATGGTAGTCTGGTTAAAAAAAGCTGCAGATTCTATGCAAGTTCAATAGTTGGTGGAAGAAGGTTGGAAGGAAAAGTGGCAATCATAACAGGATCAGCAAGTGGGCTTGGAAAGGCCACGGCCCATGAATTTATCCAAAATGGGGCCCAAGTTATCATTGCTGACAACGACACTCAACTTGGGCCACAAGTTGCAAAAGAGCTAGGCCCATCAGCACAATATGTGGAGTGTGATGTCACTGTTGAAGCCCAAATAGAAGAAGTTGTAAATGTTGCCATAACAAAGTATGGTAAACTAGATATCATGTACAACAATGCTGGCATTACAGGCCCAATATTCCCACCGAGCATAAGAGAATTGGACCTTGATGAATTTGAGAAAGTCATGAGAATTAATGTCACCGGAGTCATTGCAGGTATAAAACATGCAGCCCGCGTGATGATACCAAAGGGCTATGGATCAATTATTTGCACATCAAGCATAAGTGGACTTTTTGGTGGGCTTGGACCTCATTCATACACAATATCAAAGTCTACAATACCTGGGGTTGTGAAATCTGTGGCTAGTGAGCTATGTAAAGATGGGATTAGAGTCAATTGCATATCACCAGCTCCAATTCCTACACCAATGACATTGACTCAAGTTGGAAAATTTCTTCATGGGTTCACCCAAGAAGAAATAGGGGAAATGGTAAGTGGGCTTAGTGTTCTCAAAAGTGCCGAATGTGAGACCATTGATGTTGCTAGGGCTGCATTGTACTTGGCATCAGATGATTCTAAGTTTATCTCGGGTCACAATCTCATAGTTGATGGAGCGTACACTAGCTTTAAAAATTTCGTGTTTGCTTCTCCCGATTAA 903 0.4208 MLRTLARELKMSHMSNGSLVKKSCRFYASSIVGGRRLEGKVAIITGSASGLGKATAHEFIQNGAQVIIADNDTQLGPQVAKELGPSAQYVECDVTVEAQIEEVVNVAITKYGKLDIMYNNAGITGPIFPPSIRELDLDEFEKVMRINVTGVIAGIKHAARVMIPKGYGSIICTSSISGLFGGLGPHSYTISKSTIPGVVKSVASELCKDGIRVNCISPAPIPTPMTLTQVGKFLHGFTQEEIGEMVSGLSVLKSAECETIDVARAALYLASDDSKFISGHNLIVDGAYTSFKNFVFASPD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03287 300 Gene3D - 32 297 - -
Vivi6g03287 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 207 IPR002347 -
Vivi6g03287 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Vivi6g03287 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Vivi6g03287 300 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Vivi6g03287 300 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Vivi6g03287 300 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Vivi6g03287 300 PRINTS Glucose/ribitol dehydrogenase family signature 209 226 IPR002347 -
Vivi6g03287 300 PRINTS Glucose/ribitol dehydrogenase family signature 41 58 IPR002347 -
Vivi6g03287 300 PRINTS Glucose/ribitol dehydrogenase family signature 188 207 IPR002347 -
Vivi6g03287 300 Pfam Enoyl-(Acyl carrier protein) reductase 46 289 - -
Vivi6g03287 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 289 IPR036291 -
Vivi6g03287 300 FunFam Short-chain dehydrogenase reductase 26 293 - -
Vivi6g03287 300 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 35 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03287 Vivi-Chr6 123674507 123677843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03287 37 289 Acyl Lipid Metabolism Gene Families AT1G63380 31.955 5.97e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03287 - - cam:101504238 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03287 6 123674507 123677843 Vivi6g03287 6 123674507 123677843 ECH