Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0882 ATGAATCTCATAAAATCATGTACGAGGAAAACCCATCTCCACAACCTCGGCACCTTGACTTCGCCAAAACGACACTTTCAACATGTCGATGCTTCCATGATCAAGACAGGCTTCGATCCCAACACGTGCCGTTTCAATTTCCAAGTTCAGACCCATCTCCAGCGCGGGGATTTGGGCGCAGCACGCAAACTGTTCGACGAAATGCCTCACAAGAACGTCATCTCCACCAACACCATGATCATGGGTTACCTAAAATCTGGTAACCTTTCCACTGCTAGGAGCTTGTTTGACAGCATGGTTCAACGCTCGGTTGTTACCTGGACAATGCTGATTGGTGGCTATGCTCAGAACAACCGGTTTCTCGAAGCTTTCAATCTCTTTGCCGATATGTGTAGACACGGAATGGTTCCGGATCATATCACCTTGGCCACTCTCTTATCTGGGTTCACTGAATTTGAATCTGTAAACGAAGTAGCACAAGTGCATGGCCATGTTGTCAAAGTGGGGTATGATTCCACCCTCATGGTTTGCAACTCGTTGCTTGATTCTTACTGTAAGACGCGTAGCCTCGGTTTGGCTTGTCACCTCTTCAAGCATATGGCAGAGAAAGATAATGTCACTTTCAATGCATTGTTGACTGGGTACTCCAAAGAGGGGTTCAATCATGACGCCATAAACCTATTTTTCAAGATGCAGGATTTGGGGTTTAGGCCCTCGGAATTTACTTTTGCTGCGGTTTTAACTGCTGGGATACAGATGGATGATATAGAGTTTGGGCAACAAGTTCACAGTTTTGTGGTGAAGTGTAATTTTGTGTGGAATGTGTTTGTGGCTAATGCTTTGCTTGATTTCTACTCGAAGCATGATCGGATTGTTGAGGCAAGGAAGCTTTTTTATGAGATGCCAGAGGTGGATGGTATCTCTTACAATGTGCTCATCACGTGTTGTGCATGGAATGGAAGAGTTGAAGAATCTCTTGAACTTTTCAGGGAGTTACAGTTTACTAGATTTGACCGGAGGCAATTCCCATTTGCTACCTTGTTGAGCATTGCTGCAAATTCTTTGAACCTGGAAATGGGTAGGCAAATCCATTCCCAGGCTATTGTAACAGATGCCATTTCGGAAGTTCTAGTTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAAATTTGGGGAAGCAAATAGGATTTTTGCTGATCTGGCACATCAAAGTTCAGTTCCATGGACAGCTTTGATCTCAGGTTATGTTCAGAAGGGACTACATGAAGATGGCCTAAAGCTATTCGTTGAGATGCACAGAGCCAAAATAGGTGCTGACTCGGCCACTTATGCCAGCATCTTAAGAGCCTGTGCAAATCTAGCTTCACTGACACTAGGAAAACAGTTACACTCACGTATAATCAGATCAGGATGCCTTTCAAATGTATTTTCTGGGAGTGCACTGGTTGACATGTATGCAAAATGTGGATCCATAAAAGAAGCACTTCAAATGTTTCAAGAGATGCCTGTGAGGAATTCTGTCTCCTGGAATGCACTGATTTCAGCCTATGCACAAAACGGAGACGGTGGCCATGCTCTTAGATCATTTGAACAAATGATTCATTCAGGTCTGCAACCAAATTCTGTTAGCTTCCTTAGCATTCTATGTGCTTGCAGCCACTGTGGTCTTGTTGAAGAAGGACTACAGTACTTTAACTCCATGACTCAAGTGTATAAACTTGAACCCAGAAGAGAACATTATGCATCAATGGTTGATATGTTATGTCGTAGTGGAAGATTTGATGAGGCTGAGAAATTGATGGCTCGGATGCCATTTGAACCGGATGAGATAATGTGGTCATCAATTCTCAACTCATGTAGGATCCATAAGAATCAAGAGTTGGCAATTAAAGCAGCAGACCAACTATTCAATATGAAGGGCCTTAGAGATGCTGCTCCATATGTTAGCATGTCCAATATCTATGCAGCAGCTGGTGAATGGGACAGTGTGGGAAAGGTGAAGAAGGCCTTGAGAGAACGAGGGATCAGAAAGGTCCCGGCATACAGCTGGGTTGAAATCAAACAGAAGACCCATGTTTTCTCCGCCAATGACACGTCTCACCCACAGACGAAAGAGATAACGAGGAAGCTTGATGAACTGGAAAAGCAAATGGAGGAACAAGGGTATAAACCTGACTCAACTTGTGCCCTTCACAATGTGGACGAGGAAGTCAAGGTAGAGTCACTAAAATATCACAGTGAACGCATTGCCATTGCCTTTGCACTAATTAGCACCCCAAAGGGGTCACCCATATTGGTGATGAAGAATCTACGAGCTTGTAATGATTGTCATGCCGCTATCAAGGTAATCTCCAAGATTGTAAATAGGGAAATCACAGTCAGGGATTCAAGTAGATTCCATCATTTCACAGATGGATCTTGCTCCTGTAAGGACTACTGGTAG 2448 0.4375 MNLIKSCTRKTHLHNLGTLTSPKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQNNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0882 815 Pfam PPR repeat 279 303 IPR002885 -
Gso19g0882 815 Pfam PPR repeat 307 332 IPR002885 -
Gso19g0882 815 Pfam PPR repeat 481 506 IPR002885 -
Gso19g0882 815 Pfam PPR repeat 582 605 IPR002885 -
Gso19g0882 815 Coils Coil 705 725 - -
Gso19g0882 815 Pfam E motif 624 687 IPR046848 -
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 506 IPR002885 -
Gso19g0882 815 PANTHER - 341 433 - -
Gso19g0882 815 PANTHER - 436 757 - -
Gso19g0882 815 PANTHER - 26 339 - -
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 608 IPR002885 -
Gso19g0882 815 Pfam E+ motif 692 719 IPR046849 -
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Gso19g0882 815 PANTHER OS01G0913400 PROTEIN-RELATED 26 339 - -
Gso19g0882 815 PANTHER OS01G0913400 PROTEIN-RELATED 436 757 - -
Gso19g0882 815 PANTHER OS01G0913400 PROTEIN-RELATED 341 433 - -
Gso19g0882 815 Pfam PPR repeat family 203 248 IPR002885 -
Gso19g0882 815 Pfam PPR repeat family 103 149 IPR002885 -
Gso19g0882 815 Pfam PPR repeat family 407 454 IPR002885 -
Gso19g0882 815 Pfam PPR repeat family 507 553 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 75 104 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 410 441 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 482 506 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 307 333 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 509 542 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 279 303 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 176 203 IPR002885 -
Gso19g0882 815 TIGRFAM PPR: pentatricopeptide repeat domain 582 605 IPR002885 -
Gso19g0882 815 Gene3D Tetratricopeptide repeat domain 573 753 IPR011990 GO:0005515
Gso19g0882 815 Gene3D Tetratricopeptide repeat domain 458 572 IPR011990 GO:0005515
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 102 IPR002885 -
Gso19g0882 815 Pfam DYW family of nucleic acid deaminases 723 815 IPR032867 GO:0008270
Gso19g0882 815 Gene3D Tetratricopeptide repeat domain 157 263 IPR011990 GO:0005515
Gso19g0882 815 Gene3D Tetratricopeptide repeat domain 25 156 IPR011990 GO:0005515
Gso19g0882 815 Gene3D Tetratricopeptide repeat domain 328 457 IPR011990 GO:0005515
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Gso19g0882 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0882 Gso-Chr19 35037014 35039574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0882 56 815 Glycoside Hydrolase AT3G49170 34.968 1.95e-161 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0882 - - gmx:100793014 1645.17