Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2488 ATTTCTCATCCTTCCATAAATACACTCATCAACCCTTTCATTTCATTCTCTCTGCTTTCAAACCTGAGATCTGTTAAAAGGTCAACTCATCTTTATTTTCTTCTTCAGATCTTCAACGCAAACATGTTCAGAACATTATTATTAGCAAGGAAGTTGAAGCTCGCTACCCTTAGCAATGGTTTGAATCAAGAAGGCAGCAGATTCTATGCAACGGTTGGTGAAAGAAGGCTTGAAGGAAAAGTGGCAATCATAACCGGGGCCGCAAGTGGACTTGGCAAGGCCACAACCCAAGAATTTGTGAAGCATGGGGCCCAAGTAATCATTGCTGACAAAGACACCAATCTAGGCCCACAAATAGCAAAGGAGATGGGCCCATTAGCCCAATTTGTGGAGTGTGACGTCACCATTGAGTCCCAAATAAAAGAAGCTGTAAACGTTGCCATGACCAACTATGGAAAACTTGACATAATGTTCAACAATGCTGGCATAACAGGCCCATCAATCCCACCAAGCATAATAGATTTGGATCTTGATGACTTTGATAGGGTCATGAAAACCAATGTATGGGGCATGGTTGCGGGTATAAAGCATGCGGCCCGTGTGATGGCACCAGTGTCATCAGGGTCCATTTTATGCACATCAAGCATAAGTGGGCTTTTGGGTGGGCTTGGGCCTCATCCGTACACAATATCAAAGTTTACAATACCTGGGGTAGTGAAGTCAGTGGCAAGTGAGCTTTGCAAGTTTGGGGTGAGAGTAAATTGCATCTCCCCAGCCCCAATTGCAACACCCATGTCGTTGGCCCAAATTGGCAAATTTTTTCATCATTTAAGTGAAGAAGAAGTAAGGGAAATTGTGGGTGGGCTTGGTGAGTTAAAGGGCTCAAAGTGTGAGGACATTGATGTGGCCCGGGCTGCGTTGTTCTTGGCATCTGATGATGCAAAGTATATATCAGGCCATAACCTTGTTGTGGATGGAGGGTTCACATGCTTTAAAAGCTTGAACTTCCCTTCTCATGGTTAA 1023 0.4418 ISHPSINTLINPFISFSLLSNLRSVKRSTHLYFLLQIFNANMFRTLLLARKLKLATLSNGLNQEGSRFYATVGERRLEGKVAIITGAASGLGKATTQEFVKHGAQVIIADKDTNLGPQIAKEMGPLAQFVECDVTIESQIKEAVNVAMTNYGKLDIMFNNAGITGPSIPPSIIDLDLDDFDRVMKTNVWGMVAGIKHAARVMAPVSSGSILCTSSISGLLGGLGPHPYTISKFTIPGVVKSVASELCKFGVRVNCISPAPIATPMSLAQIGKFFHHLSEEEVREIVGGLGELKGSKCEDIDVARAALFLASDDAKYISGHNLVVDGGFTCFKSLNFPSHG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2488 340 Pfam Enoyl-(Acyl carrier protein) reductase 86 329 - -
Amo06g2488 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 78 330 IPR036291 -
Amo06g2488 340 PRINTS Glucose/ribitol dehydrogenase family signature 202 218 IPR002347 -
Amo06g2488 340 PRINTS Glucose/ribitol dehydrogenase family signature 228 247 IPR002347 -
Amo06g2488 340 PRINTS Glucose/ribitol dehydrogenase family signature 152 163 IPR002347 -
Amo06g2488 340 PRINTS Glucose/ribitol dehydrogenase family signature 292 312 IPR002347 -
Amo06g2488 340 PRINTS Glucose/ribitol dehydrogenase family signature 81 98 IPR002347 -
Amo06g2488 340 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Amo06g2488 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 216 IPR002347 -
Amo06g2488 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 228 247 IPR002347 -
Amo06g2488 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 163 IPR002347 -
Amo06g2488 340 PANTHER ALCOHOL DEHYDROGENASE-LIKE PROTEIN 54 338 - -
Amo06g2488 340 Gene3D - 68 335 - -
Amo06g2488 340 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 54 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2488 Amo-Chr6 87355734 87364404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2488 77 329 Acyl Lipid Metabolism Gene Families AT1G63380 29.278 2.68e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2488 - - gmx:100808525 401.749