Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2373 ATGAAAGCATGTACCAAGAAAATCTCATGCCGAAGCTTTGCCAAATTGACACATCCAAAACCGCACCTTCATGTCCGAACCCCCATAGACGCTTCCATCATCAAGACAGGCTTCATGCCCCAAACATGCCGTTTCAATTTCCTGATCAGGGCCTGTGTTCAACGTGGCGAATTGCGCCGTGCTCGGAAACTGTTCGACGGAATGCCTCACAGAAACACTTTCTCTGCTAACATGATGATCATGGGTTACATACAATCTGGCGATCTTGCCACTGCAACTAACTTGTTTGATGGCATGGATGATCGCAATGCTGTTTCCTGGACAATGCTGATTGGCGGCTATGCTCAGAACAATAGGTTTCGTGAAGCCTTTGGTCTTTTTGTTGAGATGTGTAGGCATGGAGTTGAACCAGATTATGTTACATTTTCCACTCTCTTATCTGGGTTCACTGAGTTCGATTCTGTCAATGAAGTAACCCAGGTTCATGCCTATGTCGTTAAGTTGGGGCATAATTCGGCCATGGTAGTTTCCAACTCATTGCTTGATTCTTACTGTAAAACCCGCAGCCTCGGGTTAGCTTGTCAGCTGTTTGAGCACATGCCTATGAAGGATTCTGTCACTTACAATGCATTAATGGCAGGGTATTCAAAAGAGGGGTTGAATCATGAGGCCTTAAACCTGTTCTTCAGGATGCAGGATTTGGAGTTTAAGCCTACAGAATTTACTTTTGCTACAGTTTTGTGTTGTGGGATACAGTTGGATGATATAGAATTTGGGCAACAAGTTCACAGTCTTCTGCTGAAGACTAATTTTGTGTGGAATGTGTTCGTGGCAAATGCTTTGCTTGATTTCTACTCGAAGCATGACCGGGTTGCTGAAGCACAGAAACTTTTTAATGAGATGCCAGAGTTGGATGGCATCTCTTACAATGTACTTATCACATGTTATGTGTGGAACGGAAGATTCAAAGAATCTATTGAACTATTCAGGGAGTTACACCTCACTAGATTTAACAGAAGGCAATTCCCATATGCTACGTTGCTGAGCATGGCTGCAAATGCATTGAACCTGGAAATGGGTAGGCAAATTCATTCCCAGGCTATTGTAACAGCTGCCATTTCAGACAATATGATTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAGATTTGGGGAAGCAAATAGGATTTTTGCAAATTTGGCTCTTCAAAGTTCAGTTCCATGGACAGCCCTGATCTCGGGTAATGTTCAGAAGGGACACCCTGAAGAAGGTATAAAGCTATTCATTGAGATGCAAAGAGCTGAAAAGACTGCAGATGCAGCTACCTATGCCAGCATCCTAAAAGCCTGTGCAAATTTAGCCTCACAGGCTCTGGGAAAGCAGTTACACTCACACATAATTAGATCAGGATGCCTTTCAAATGTATTTTCTGGGAGTGCACTGCTTGACATGTATGCGAAATGTGGATCCATCGAAAATGCACTTCAAATGTTTCAAGAGATGCCAGTTAGGAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAATGGAGATGGTGAAAATACTCTTAGGTCATTTGAACAAATGGTTCATTCAGGTCTGAAACCAAATGCTGTTAGTTTCCTTAGTGTGCTGTGTGCATGCAGCCATTGTGGTCTAGTTGAAGAAGGATTGCAATACTTCAACTCCATGACTCAAATATATGAAGTTACTCCTAAACGAGAGCATTATACTTCAATGGTCGATATGCTGTGTCGGAGTGGGAGATTCGAGGAGGCAGTGAAAATGATGGCTCAGATGCCTTTTGAACCTGATGAAATAATGTGGTCATCAGTTCTAAACTCCTGCAGAATCCATAAAAATCAAGAGTTGGCAAAGAAAGCAGCAGACCAATTATTTAGCATGAAGGAGCTCAGAGATGCTGCTCCATATGTTAGCATGGCCAATATATATGCAGAAATTGGTGAATGGGAAAATGTAGGGAAGGTGAAGACGGCCATGAGAAGCCGAGGAATTAGAAAAGTGCCGGCTTACAGTTGGGTCGAAATCAAACACAAAACTCATGTTTTTTCAGCAAATAACAAGTCTCACCCACAGATGAAAGAGATCACAAGGAAGCTTGATGATCTGGAGAAGCAAATGGAGAAAGAAGGGTACAAGCCTGACTTAAGCTGTGCCCTTCACAATGAGGATAACGAACTGAAGGCAGAATCCCTTAAATATCACAGTGAATGCATTGCCATTGCATATGCACTGATCAGCACCTCAGAAGGGTCACCGATTGTAGTAATGAAGAATATAAGAGCTTGTACAAATTGCCATGCTGCAATCAAGGCAATATCCAAGATAGTTGGTAGGGAAATCACAGTGAGAGATTCAAGTAGGTTCCATCATTTCAGAGATGGAATCTGCTCCTGTAGGGACTACTGGTAG 2448 0.4257 MKACTKKISCRSFAKLTHPKPHLHVRTPIDASIIKTGFMPQTCRFNFLIRACVQRGELRRARKLFDGMPHRNTFSANMMIMGYIQSGDLATATNLFDGMDDRNAVSWTMLIGGYAQNNRFREAFGLFVEMCRHGVEPDYVTFSTLLSGFTEFDSVNEVTQVHAYVVKLGHNSAMVVSNSLLDSYCKTRSLGLACQLFEHMPMKDSVTYNALMAGYSKEGLNHEALNLFFRMQDLEFKPTEFTFATVLCCGIQLDDIEFGQQVHSLLLKTNFVWNVFVANALLDFYSKHDRVAEAQKLFNEMPELDGISYNVLITCYVWNGRFKESIELFRELHLTRFNRRQFPYATLLSMAANALNLEMGRQIHSQAIVTAAISDNMIGNSLVDMYAKCDRFGEANRIFANLALQSSVPWTALISGNVQKGHPEEGIKLFIEMQRAEKTADAATYASILKACANLASQALGKQLHSHIIRSGCLSNVFSGSALLDMYAKCGSIENALQMFQEMPVRNSVSWNALISAYAQNGDGENTLRSFEQMVHSGLKPNAVSFLSVLCACSHCGLVEEGLQYFNSMTQIYEVTPKREHYTSMVDMLCRSGRFEEAVKMMAQMPFEPDEIMWSSVLNSCRIHKNQELAKKAADQLFSMKELRDAAPYVSMANIYAEIGEWENVGKVKTAMRSRGIRKVPAYSWVEIKHKTHVFSANNKSHPQMKEITRKLDDLEKQMEKEGYKPDLSCALHNEDNELKAESLKYHSECIAIAYALISTSEGSPIVVMKNIRACTNCHAAIKAISKIVGREITVRDSSRFHHFRDGICSCRDYW* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2373 815 PANTHER - 26 340 - -
Ahy16g2373 815 PANTHER - 342 433 - -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Ahy16g2373 815 Coils Coil 705 725 - -
Ahy16g2373 815 Gene3D Tetratricopeptide repeat domain 459 555 IPR011990 GO:0005515
Ahy16g2373 815 Gene3D Tetratricopeptide repeat domain 32 164 IPR011990 GO:0005515
Ahy16g2373 815 TIGRFAM PPR: pentatricopeptide repeat domain 582 606 IPR002885 -
Ahy16g2373 815 TIGRFAM PPR: pentatricopeptide repeat domain 307 333 IPR002885 -
Ahy16g2373 815 TIGRFAM PPR: pentatricopeptide repeat domain 482 506 IPR002885 -
Ahy16g2373 815 TIGRFAM PPR: pentatricopeptide repeat domain 509 543 IPR002885 -
Ahy16g2373 815 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Ahy16g2373 815 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Ahy16g2373 815 PANTHER - 439 758 - -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Ahy16g2373 815 Pfam E+ motif 692 719 IPR046849 -
Ahy16g2373 815 PANTHER OS01G0913400 PROTEIN-RELATED 439 758 - -
Ahy16g2373 815 Pfam PPR repeat 75 102 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat 45 71 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat 279 303 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat 481 506 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat 307 332 IPR002885 -
Ahy16g2373 815 Pfam E motif 624 687 IPR046848 -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 506 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat family 407 454 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat family 103 149 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat family 203 248 IPR002885 -
Ahy16g2373 815 Pfam PPR repeat family 507 553 IPR002885 -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 608 IPR002885 -
Ahy16g2373 815 Pfam DYW family of nucleic acid deaminases 723 815 IPR032867 GO:0008270
Ahy16g2373 815 Pfam PPR repeat 581 605 IPR002885 -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Ahy16g2373 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Ahy16g2373 815 Gene3D Tetratricopeptide repeat domain 200 262 IPR011990 GO:0005515
Ahy16g2373 815 Gene3D Tetratricopeptide repeat domain 263 337 IPR011990 GO:0005515
Ahy16g2373 815 Gene3D Tetratricopeptide repeat domain 338 458 IPR011990 GO:0005515
Ahy16g2373 815 Gene3D Tetratricopeptide repeat domain 559 760 IPR011990 GO:0005515
Ahy16g2373 815 PANTHER OS01G0913400 PROTEIN-RELATED 26 340 - -
Ahy16g2373 815 PANTHER OS01G0913400 PROTEIN-RELATED 342 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2373 Ahy-Chr16 130123204 130137334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2373 35 815 Glycoside Hydrolase AT3G49170 33.748 5.40e-157 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2373 - - gmx:100793014 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2373 16 130123204 130137334 Ahy16g2373 16 130123204 130137334 ECH
Ahy16g2373 16 130123204 130137334 Ahy6g2036 6 99246065 99254562 hybridization