Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1027 ATGCTCAGAACACTAGCAAGGGAGTTGAAGCTCAGCAACATCATCAGCAATAGTAATTTGGTTAGAAAAAGCAGCAGATTCTATGCAACGGTTGGTGGAAGAAGCAGGTTAGAAGGAAAAGTGGCAATCATAACAGGGGCAGCAAGTGGACTTGGAAAGGCCACAGCCCATGAGTTTATCCAACATGGTGCCAAAGTCATCATTGCTGACAATGACACTCAACTTGGGCCTCAGGTTGCAAATGAATTGGGCCCATCAGCCCATTATGTAGAATGTGATGTCACTATTGAGGCCCAAATTGAAGAAGCTGTGAATGTTGCCATGACAAAGTATGGTAAACTAGACATCATGTACAACAATGCTGGCATAACAGGCCCAATAACCCCACATAGCATAACAGAATTGGACCTTGATGAATTTGACAAGGTCATGAGAATCAATGTTACTGGAATCATTGGAGGTATAAAACACGCGGCCCGAGTGATGGTACCGGTGGGTTATGGGTCCATTATATGCACATCAAGCATAAGTGGGCTATTAGGTGGGCTTGGCCCTCATCCATACACAATTTCAAAATCTACAATACCTGGTGTGGTGAAATCTGCGGCTAGTGAACTATGTGGAGCTGGGATTAGAGTCAATTGCATATCACCAGCTGCAATTCCTACACCAATGTCATTAGGTCAAGTTGGAAAATTTCTTCCTGGTTTTACCCCAGAACAGATAGGGGAAATTGTTAGTGGGCTTGGTGTTCTCAAAGGTGCAAAATGTGAGGCCATTGATGTTGCTAGGACCGCATTGTACTTAGCATCAGATGACTCAAAGTTTATTTCTGGCCACAATCTCGTAGTTGATGGAGGGTTCACTTGCTTTAAAAATTTCGTGTTTCCTTCTCCGGATCAATCAACCTAA 912 0.4353 MLRTLARELKLSNIISNSNLVRKSSRFYATVGGRSRLEGKVAIITGAASGLGKATAHEFIQHGAKVIIADNDTQLGPQVANELGPSAHYVECDVTIEAQIEEAVNVAMTKYGKLDIMYNNAGITGPITPHSITELDLDEFDKVMRINVTGIIGGIKHAARVMVPVGYGSIICTSSISGLLGGLGPHPYTISKSTIPGVVKSAASELCGAGIRVNCISPAAIPTPMSLGQVGKFLPGFTPEQIGEIVSGLGVLKGAKCEAIDVARTALYLASDDSKFISGHNLVVDGGFTCFKNFVFPSPDQST* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1027 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Tpr6g1027 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Tpr6g1027 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 207 IPR002347 -
Tpr6g1027 303 Pfam Enoyl-(Acyl carrier protein) reductase 46 289 - -
Tpr6g1027 303 PRINTS Glucose/ribitol dehydrogenase family signature 41 58 IPR002347 -
Tpr6g1027 303 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Tpr6g1027 303 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Tpr6g1027 303 PRINTS Glucose/ribitol dehydrogenase family signature 188 207 IPR002347 -
Tpr6g1027 303 PRINTS Glucose/ribitol dehydrogenase family signature 209 226 IPR002347 -
Tpr6g1027 303 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Tpr6g1027 303 PANTHER ALCOHOL DEHYDROGENASE-LIKE PROTEIN 16 300 - -
Tpr6g1027 303 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 290 IPR036291 -
Tpr6g1027 303 Gene3D - 30 296 - -
Tpr6g1027 303 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 16 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1027 Tpr-Chr6 9471792 9476609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1027 37 289 Acyl Lipid Metabolism Gene Families AT1G63380 32.453 1.20e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1027 - - cam:101504238 494.197