Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1037 ATGAATTACATTAAACCATGTACGAGGAAATTCAACAATCTTGTCACATTAACTGCTCCAAAACCTCACCTTCACGTCGATGCTTCCATCATCAAGACAGGTTTCGATCCCAATACATACCGTTCCAATTTCCTTGTCAGCACTCTTCTCCAACGCGGGGATTTGAAAGGTGCTCGCAAATTGTTCGATGAAATGCCTCACAAGAACATATTCTCCACTAACACCATAATCACGGGTTATATCAAATCTGGCAATCTTTCTGAAGCTAAAACCTTGTTTGATTCCATGTTTGAACGTAATGCTGTTACGTGGACAATGTTGATTGGTGGCTATGCTCAAAATAATCGATTTCGTGAGGCTTTTGGCCTTTTTGTTGAAATGGGTAGGCATGGGATTGATCTGGATCATGTTACTTTGGCCACTTTGTTGTCTGGGTTCACTGAGTTTGATTCTGTTAATGAAGTTAGACAGGTTCATGTTCATGTTGTTAAATTGGGATATGATTCGACGCTTGTGGTTTCTAACTCGTTGCTTGATTCTTATTGTAAGACTCACAATCTTGAATTAGCTTGTCGCTTGTTCAATGATATACCTGAGAGAGATTCTGTTACTTTTAATGCCTTGTTGACGGGATACTCAAAAGAAGGGTTTAATCATGAAGCTATTAACCTATTTTTTAAGATGCAGGAAGTCGGGTATAGGCCAACCGAGTTTACTTTTGCTGCAATTTTAACAGCAGGTATACAGTTGGATGATATAGAATTCGGACAACAAGTTCACGGTTTTGTAGTGAAGTGTAATTTTGTTTGGAATGTGTTTGTGGCTAATGCATTGCTTGATTTTTACTCGAAGCATGACCGTCTTGTTGAAACAAGGAAGCTATTTTATGAGATGCCGGAAGTGGATGGTATTTCTTACAATGTACTTGTCACGTGTTATGCGTGGAATGGAAGAGTGAAAGAATCTCTTCAATTATTCAGGGAATTACAGTTCACTGGATTTGACAGGAGACAATTCCCATTTTCTACCTTGTTGAGCATAGCTGCAATTTCTTTGAACTTGGATATGGGTAGACAAATTCATTCCCAGACTATTGTGACGGATGCGATTTCAGAAATCCTCGTAGGGAATTCAGTGGTTGACATGTATGCTAAATGTGGTAAATTTGGGGACGCAAATAGGGTCTTTGCAGATCTGGCTCATCAAAGTTCAGTGCCATGGACAGCCATGATCTCGGCTTATGTCCAGAAGGGGCTTCATGAAGATGGTCTAAAGCTATTCATTGAGATGCAAAGAGCTAAAATCGTTGCTGATGCAGCCACTTATGCCAGCATTGTAAGAGCATGTGCAAGTTTAGCCTCATTGACGCTAGGAAAGCAGTTACACTCACATATAATTGGATCGGGATACATTTCAAATGTATTTTCTGGGAGTGCACTAGTTGACATGTATGCAAAATGTGGATCCATAAAAGATGCACTTCAAATGTTTCAAGAGATGCCCATAAGAAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAATGGAGATGGTGACCGTACCCTTAGATTGTTTGAAGAAATGGTTCGTTCGGGTTTGCAGCCAGATTCTGTTAGCCTCCTTAGCGTTCTGTGTGCTTGCAGTCACTGTGGTCTAGTTGAAGAAGGCTTACAGTACTTCCACTCCATGACAAAAATTTATAAACTTGTTCCTAAGAAAGAGCATTATGCATCGGTAGTTGATATGTTATGTCGTGGTGGAAGATTTGACGAGGCAGAGAAATTGATGGCTCAAATGCCTTTTGAACCTGATGAAATAATGTGGTCATCTATTCTCAATTCATGCAGAATCCATAAAAATCAAGAGTTGGCAAAGAAAGCAGCAGAACAACTATTCAATATGAAGGTACTTAGAGATGCTGCTCCATATGTTAGCATGTCCAATATCTATGCAGAAGCTGGTGAATGGGACAATGTAGTGAAGGTGAAGAAAGCCATGAGAGACAGAGGAGTAAAGAAAGTCACTGCTTATAGTTGGGTCGAAATCAAGCACAAAACTCATGTTTTCACAGCCAATGACAAGTCTCATCCACAAATGAGAGATATAATGAAGAAGCTTGACGAGTTGGAAGAGAAAATGGTGAAACAGGGGTATAAACCAGACTCAAGTTGTTCCCTTCACAATGTGGATGAGGAAGTGAAAGTAGAATCTCTCAAATATCACAGTGAACGCATTGCCATTGCCTTTGCACTAATTACCACCCCAAAAGGTTCACCTATATTGGTAATGAAGAACCTGAGAGCTTGTACTGATTGTCACGCCGCCATCAAGGTGATCTCCAAGATCGTTGATCGAGAAATCACAGTCAGGGATTCAAGTAGGTTCCATCATTTCAAGGATGGGTTTTGCTCGTGTAGAGACTACTGGTAG 2439 0.403 MNYIKPCTRKFNNLVTLTAPKPHLHVDASIIKTGFDPNTYRSNFLVSTLLQRGDLKGARKLFDEMPHKNIFSTNTIITGYIKSGNLSEAKTLFDSMFERNAVTWTMLIGGYAQNNRFREAFGLFVEMGRHGIDLDHVTLATLLSGFTEFDSVNEVRQVHVHVVKLGYDSTLVVSNSLLDSYCKTHNLELACRLFNDIPERDSVTFNALLTGYSKEGFNHEAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRLVETRKLFYEMPEVDGISYNVLVTCYAWNGRVKESLQLFRELQFTGFDRRQFPFSTLLSIAAISLNLDMGRQIHSQTIVTDAISEILVGNSVVDMYAKCGKFGDANRVFADLAHQSSVPWTAMISAYVQKGLHEDGLKLFIEMQRAKIVADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPIRNSVSWNALISAYAQNGDGDRTLRLFEEMVRSGLQPDSVSLLSVLCACSHCGLVEEGLQYFHSMTKIYKLVPKKEHYASVVDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSILNSCRIHKNQELAKKAAEQLFNMKVLRDAAPYVSMSNIYAEAGEWDNVVKVKKAMRDRGVKKVTAYSWVEIKHKTHVFTANDKSHPQMRDIMKKLDELEEKMVKQGYKPDSSCSLHNVDEEVKVESLKYHSERIAIAFALITTPKGSPILVMKNLRACTDCHAAIKVISKIVDREITVRDSSRFHHFKDGFCSCRDYW* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1037 812 Pfam E+ motif 689 716 IPR046849 -
Tpr6g1037 812 PANTHER - 433 755 - -
Tpr6g1037 812 PANTHER - 338 430 - -
Tpr6g1037 812 PANTHER - 24 335 - -
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 503 IPR002885 -
Tpr6g1037 812 Pfam DYW family of nucleic acid deaminases 720 812 IPR032867 GO:0008270
Tpr6g1037 812 Gene3D Tetratricopeptide repeat domain 153 251 IPR011990 GO:0005515
Tpr6g1037 812 Gene3D Tetratricopeptide repeat domain 32 152 IPR011990 GO:0005515
Tpr6g1037 812 Gene3D Tetratricopeptide repeat domain 252 332 IPR011990 GO:0005515
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat family 201 245 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat family 504 550 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat family 100 146 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat family 404 450 IPR002885 -
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat 304 330 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat 478 501 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat 43 70 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat 579 602 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat 72 99 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat 174 200 IPR002885 -
Tpr6g1037 812 Pfam PPR repeat 276 300 IPR002885 -
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Tpr6g1037 812 Gene3D Tetratricopeptide repeat domain 333 455 IPR011990 GO:0005515
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 407 438 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 479 501 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 506 540 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 73 99 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 102 135 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 579 603 IPR002885 -
Tpr6g1037 812 TIGRFAM PPR: pentatricopeptide repeat domain 175 200 IPR002885 -
Tpr6g1037 812 Pfam E motif 621 684 IPR046848 -
Tpr6g1037 812 Gene3D Tetratricopeptide repeat domain 456 570 IPR011990 GO:0005515
Tpr6g1037 812 Gene3D Tetratricopeptide repeat domain 571 750 IPR011990 GO:0005515
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 99 IPR002885 -
Tpr6g1037 812 PANTHER OS01G0913400 PROTEIN-RELATED 24 335 - -
Tpr6g1037 812 PANTHER OS01G0913400 PROTEIN-RELATED 433 755 - -
Tpr6g1037 812 PANTHER OS01G0913400 PROTEIN-RELATED 338 430 - -
Tpr6g1037 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1037 Tpr-Chr6 9700443 9703672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1037 53 812 Glycoside Hydrolase AT3G49170 33.935 3.67e-153 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1037 - - gmx:100793014 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1037 6 9700443 9703672 Tpr6g1037 6 9700443 9703672 ECH