Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02918 ATGAAAGCATGTACCAAGAAAATCTCATGCCGAAGCTTTGCCAAATTGACACATCCAAAACTGCACCTTCATGTCCGAACCCCCATAGACGCTTCCATCATCAAGACAGGCTTCATGCCCCAAACATGCCGTTTCAATTTCCTGATCAGGGCCTGTGTTCAACGGGGCGAATTGCGCCGTGCTCGGAAGCTGTTCGACGGAATGCCTCACAGAAACACCTTCTCTGCTAACATGATGATCATGGGTTACATACAATCTGGCGATCTTGCCACTGCAACTAACTTGTTTGATGGCATGGATGATCGCAATGCTGTTTCCTGGACAATGCTGATTGGCGGCTATGCTCAAAACAATAGGTTTCGTGAAGCCTTTGGTCTTTTTGTTGAGATGTGTAGGCATGGAGTTGAACCAGATTATGTTACATTTTCCACTCTCTTATCTGGGTTCACTGAGTTCAATTCTGTCAATGAAGTAACCCAGGTTCATGCCTATGTCGTTAAGTTGGGGCATAATTCGGCCATGGTAGTTTCCAACTCATTGCTTGATTCTTACTGTAAAACCCGCAGCCTTGGGTTAGCTTGTCAGCTGTTTGAGCACATGCCTATGAAGGATTCTGTCACTTACAATGCATTAATGGCAGGGTATTCGAAAGAGAGGTTGAATCAGGAGGCCTTAAACCTGTTCTTCAGGATGCAGGATTTGGAGTTTAAGCCTACAGAATTTACTTTTGCTACAGTTTTGTGTTGCGGGATACAGTTGGATGATATAGAATTTGGGCAACAGGTTCACAGTCTTCTGCTGAAGACTAATTTTGTGTGGAATGTGTTCGTGGCAAATGCTTTGCTTGATTTCTACTCGAAGCATGACCGGGTTGCTGAAGCACAGAAACTTTTTAATGAGATGCCAGAGTTGGATGGCATCTCTTACAATGTACTTATCACATGTTATGTGTGGAACGGAAGATTCAAAGAATCTATTGAACTATTCAGGGAGTTACACCTCACTAGATTTAACAGAAGGCAATTCCCATATGCTACGTTGCTGAGCATGGCTGCAAATGCATCGAACCTGGAAATGGGTAGGCAAATTCATTCCCAGGCTATTGTAACAGCAGCCATTTCAGACGATATGATTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAGATTTGGGGAAGCAAATAGGATTTTTGCAAATTTGGCTCTTCAAAGTTCAGTTCCATGGACAGCTCTGATCTCGGGTAATGTTCAGAAGGGACACCCTGAAGAAGGTATAAAGCTATTCATTGAGATGCAAAGAGCTGAAAAGACTGCAGATGCAGCTACCTATGCCAGCATCCTAAAAGCCTGTGCAAATTTAGCCTCACAGGCTCTGGGAAAGCAGTTACACTCGCACATAATTAGATCAGGATGCCTTTCAAATGTATTTTCTGGGAGTGCACTGCTTGACATGTATGCGAAATGTGGATCCATCGAAAATGCACTTCAAATGTTTCAAGAGATGCCAGTTAGGAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAATGGAGATGGTGAAAATACTCTTAGGTCATTTGAACAAATGGTTCATTCAGGTCTGAAACCAAATGCTGTTAGTTTCCTTAGTGTGCTTTGTGCATGCAGCCATTGTGGTCTAGTTGAAGAAGGATTGCAATACTTCAACTCCATGACTCAAATATATGAAGTTACTCCTAAACGAGAGCATTATACTTCAATGGTCGATATGCTTTGTCGGAGTGGGAGATTCGAGGAGGCAGTGAAAATGATGGCTCAGATGCCTTTTGAACCTGATGAAATAATGTGGTCATCGGTTCTAAACTCCTGCAGAATCCATAAAAATCAAGAGTTGGCAAAGAAAGCAGCAGACCAATTATTTAGCATGAAGGAGCTCAGAGATGCTGCTCCATATGTTAGCATGGCCAATATATATGCAGAAGTTGGTGAATGGGAAAATGTAGGGAAGGTGAAGACGGCCATGAGAAGCCGAGGAATTAGAAAAGTGCCGGCTTACAGTTGGGTCGAGATCAAACACAAAACTCATATTTTTTCAGCAAATAACAAGTCTCACCCACAAATGAAAGAGATCACAAGGAAGCTTGATGATCTGGAGGAGCAAATGGAGAAAGAAGGGTACAAGCCTGACTTAAGCTGTGCCCTTCACAATGAGGATAACGAACTGAAGGCAGAATCCCTTAAATATCACAGTGAACGCATTGCCATTGCATATGCACTGATCAGCACCTCAGAAGGGTCACCGATTGTAGTAATGAAGAATATAAGAGCTTGTACAAATTGCCATGCTGCAATCAAGGCAATATCCAAGATAGTTGGTAGGGAAATCACAGTGAGAGATTCAAGTAGGTTCCATCATTTCAGAGATGGAATCTGCTCCTGTAGGGACTACTGGTAG 2448 0.4277 MKACTKKISCRSFAKLTHPKLHLHVRTPIDASIIKTGFMPQTCRFNFLIRACVQRGELRRARKLFDGMPHRNTFSANMMIMGYIQSGDLATATNLFDGMDDRNAVSWTMLIGGYAQNNRFREAFGLFVEMCRHGVEPDYVTFSTLLSGFTEFNSVNEVTQVHAYVVKLGHNSAMVVSNSLLDSYCKTRSLGLACQLFEHMPMKDSVTYNALMAGYSKERLNQEALNLFFRMQDLEFKPTEFTFATVLCCGIQLDDIEFGQQVHSLLLKTNFVWNVFVANALLDFYSKHDRVAEAQKLFNEMPELDGISYNVLITCYVWNGRFKESIELFRELHLTRFNRRQFPYATLLSMAANASNLEMGRQIHSQAIVTAAISDDMIGNSLVDMYAKCDRFGEANRIFANLALQSSVPWTALISGNVQKGHPEEGIKLFIEMQRAEKTADAATYASILKACANLASQALGKQLHSHIIRSGCLSNVFSGSALLDMYAKCGSIENALQMFQEMPVRNSVSWNALISAYAQNGDGENTLRSFEQMVHSGLKPNAVSFLSVLCACSHCGLVEEGLQYFNSMTQIYEVTPKREHYTSMVDMLCRSGRFEEAVKMMAQMPFEPDEIMWSSVLNSCRIHKNQELAKKAADQLFSMKELRDAAPYVSMANIYAEVGEWENVGKVKTAMRSRGIRKVPAYSWVEIKHKTHIFSANNKSHPQMKEITRKLDDLEEQMEKEGYKPDLSCALHNEDNELKAESLKYHSERIAIAYALISTSEGSPIVVMKNIRACTNCHAAIKAISKIVGREITVRDSSRFHHFRDGICSCRDYW 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02918 815 FunFam Putative pentatricopeptide repeat-containing protein 573 750 - -
Arst6g02918 815 FunFam Putative pentatricopeptide repeat-containing protein At2g01510 29 161 - -
Arst6g02918 815 Pfam PPR repeat 75 102 IPR002885 -
Arst6g02918 815 Pfam PPR repeat 45 71 IPR002885 -
Arst6g02918 815 Pfam PPR repeat 279 303 IPR002885 -
Arst6g02918 815 Pfam PPR repeat 481 506 IPR002885 -
Arst6g02918 815 Pfam PPR repeat 307 332 IPR002885 -
Arst6g02918 815 Pfam DYW family of nucleic acid deaminases 723 815 IPR032867 GO:0008270
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Arst6g02918 815 NCBIfam pentatricopeptide repeat 307 333 IPR002885 -
Arst6g02918 815 NCBIfam pentatricopeptide repeat 206 240 IPR002885 -
Arst6g02918 815 NCBIfam pentatricopeptide repeat 509 543 IPR002885 -
Arst6g02918 815 NCBIfam pentatricopeptide repeat 105 138 IPR002885 -
Arst6g02918 815 NCBIfam pentatricopeptide repeat 582 606 IPR002885 -
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 608 IPR002885 -
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Arst6g02918 815 Gene3D Tetratricopeptide repeat domain 574 753 IPR011990 GO:0005515
Arst6g02918 815 Gene3D Tetratricopeptide repeat domain 248 374 IPR011990 GO:0005515
Arst6g02918 815 Gene3D Tetratricopeptide repeat domain 458 573 IPR011990 GO:0005515
Arst6g02918 815 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 230 752 IPR046960 GO:0003723|GO:0009451
Arst6g02918 815 Coils Coil 705 725 - -
Arst6g02918 815 FunFam Pentatricopeptide repeat-containing protein mitochondrial 460 570 - -
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 506 IPR002885 -
Arst6g02918 815 Gene3D Tetratricopeptide repeat domain 32 168 IPR011990 GO:0005515
Arst6g02918 815 Gene3D Tetratricopeptide repeat domain 375 457 IPR011990 GO:0005515
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Arst6g02918 815 Pfam E motif 624 687 IPR046848 -
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Arst6g02918 815 FunFam Pentatricopeptide repeat-containing protein At3g13880 361 459 - -
Arst6g02918 815 Pfam PPR repeat 581 605 IPR002885 -
Arst6g02918 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Arst6g02918 815 Pfam PPR repeat family 407 454 IPR002885 -
Arst6g02918 815 Pfam PPR repeat family 103 149 IPR002885 -
Arst6g02918 815 Pfam PPR repeat family 203 248 IPR002885 -
Arst6g02918 815 Pfam PPR repeat family 507 553 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02918 Arst-Chr6 92895497 92900397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02918 35 815 Glycoside Hydrolase AT3G49170 33.913 2.53e-157 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02918 - - gmx:100793014 1282.7