Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02670 ATGAAAGCATGTACCAAGAAAATCTCATGCCGAAGCTTTGCCAAATTGACACATCCAAAACCGCACCTTCATGTCCGAACCCCCATAGACGCTTCCATCATCAAGACAGGCTTCATGCCCCAAACATGCCGTTTCAATTTCCTGATCAGGGCCTGTGTTCAACGTGGCGAATTGCGCCGTGCTCGGAAACTGTTCGACGGAATGCCTCACAGAAACACTTTCTCTGCTAACATGATGATCATGGGTTACATACAATCTGGCGATCTTGCCACTGCAACTAACTTGTTTGATGGCATGGATGATCGCAATGCTGTTTCCTGGACAATGCTGATTGGCGGCTATGCTCAGAACAATAGGTTTCGTGAAGCCTTTGGTCTTTTTGTTGAGATGTGTAGGCATGGAGTTGAACCAGATTATGTTACATTTTCCACTCTCTTATCTGGGTTCACTGAGTTCGATTCTGTCAATGAAGTAACCCAGGTTCATGCCTATGTCGTTAAGTTGGGGCATAATTCGGCCATGGTAGTTTCCAACTCATTGCTTGATTCTTACTGTAAAACCCGCAGCCTCGGGTTAGCTTGTCAGCTGTTTGAGCACATGCCTATGAAGGATTCTGTCACTTACAATGCATTAATGGCAGGGTATTCAAAAGAGGGGTTGAATCATGAGGCCTTAAACCTGTTCTTCAGGATGCAGGATTTGGAGTTTAAGCCTACAGAATTTACTTTTGCTACAGTTTTGTGTTGTGGGATACAGTTGGATGATATAGAATTTGGGCAACAAGTTCACAGTCTTCTGCTGAAGACTAATTTTGTGTGGAATGTGTTCGTGGCAAATGCTTTGCTTGATTTCTACTCGAAGCATGACCGGGTTGCTGAAGCACAGAAACTTTTTAATGAGATGCCAGAGTTGGATGGCATCTCTTACAATGTACTTATCACATGTTATGTGTGGAACGGAAGATTCAAAGAATCTATTGAACTATTCAGGGAGTTACACCTCACTAGATTTAACAGAAGGCAATTCCCATATGCTACGTTGCTGAGCATGGCTGCAAATGCATTGAACCTGGAAATGGGTAGGCAAATTCATTCCCAGGCTATTGTAACAGCTGCCATTTCAGACAATATGATTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAGATTTGGGGAAGCAAATAGGATTTTTGCAAATTTGGCTCTTCAAAGTTCAGTTCCATGGACAGCCCTGATCTCGGGTAATGTTCAGAAGGGACACCCTGAAGAAGGTATAAAGCTATTCATTGAGATGCAAAGAGCTGAAAAGACTGCAGATGCAGCTACCTATGCCAGCATCCTAAAAGCCTGTGCAAATTTAGCCTCACAGGCTCTGGGAAAGCAGTTACACTCACACATAATTAGATCAGGATGCCTTTCAAATGTATTTTCTGGGAGTGCACTGCTTGACATGTATGCGAAATGTGGATCCATCGAAAATGCACTTCAAATGTTTCAAGAGATGCCAGTTAGGAATTCAGTCTCCTGGAATGCACTGATTTCAGCTTATGCACAAAATGGAGATGGTGAAAATACTCTTAGGTCATTTGAACAAATGGTTCATTCAGGTCTGAAACCAAATGCTGTTAGTTTCCTTAGTGTGCTGTGTGCATGCAGCCATTGTGGTCTAGTTGAAGAAGGATTGCAATACTTCAACTCCATGACTCAAATATATGAAGTTACTCCTAAACGAGAGCATTATACTTCAATGGTCGATATGCTGTGTCGGAGTGGGAGATTCGAGGAGGCAGTGAAAATGATGGCTCAGATGCCTTTTGAACCTGATGAAATAATGTGGTCATCAGTTCTAAACTCCTGCAGAATCCATAAAAATCAAGAGTTGGCAAAGAAAGCAGCAGACCAATTATTTAGCATGAAGGAGCTCAGAGATGCTGCTCCATATGTTAGCATGGCCAATATATATGCAGAAATTGGTGAATGGGAAAATGTAGGGAAGGTGAAGACGGCCATGAGAAGCCGAGGAATTAGAAAAGTGCCGGCTTACAGTTGGGTCGAAATCAAACACAAAACTCATGTTTTTTCAGCAAATAACAAGTCTCACCCACAGATGAAAGAGATCACAAGGAAGCTTGATGATCTGGAGAAGCAAATGGAGAAAGAAGGGTACAAGCCTGACTTAAGCTGTGCCCTTCACAATGAGGATAACGAACTGAAGGCAGAATCCCTTAAATATCACAGTGAACGCATTGCCATTGCATATGCACTGATCAGCACCTCAGAAGGGTCACCGATTGTAGTAATGAAGAATATAAGAGCTTGTACAAATTGCCATGCTGCAATCAAGGCAATATCCAAGATAGTTGGTAGGGAAATCACAGCTCTTGCTGATATATTACCAAAAGAAACACTTCTGTGGAAGCTGAAGCTGCTTAGATCAGCTTCTGCATATGCCAACTCACGCCTTCATGCTGTAAAAGCTCAGGCTTTGATACTATCCAGTGAAAAAGACGAATTACTACCTAGCAAAGAGGAAGGCGAAAGGCTACGTAAGTTATTAGCTAACTCTGAGCTATGTAAATTTGCAGACAGTGGATATTTCCTATTCCTGGAAGGCAATATTGACCTGGTAACAGTCATCAAGGGAACTTCTTTCTACTGCTGTGTAAAGAAGCATGATTATGTATCAGATTATATACCGCCAACACCTACGGAATTCAAAGAAGTACTGAACTCTTACAGGCTATTGAACACTCTGACAAGTCCTGTAATGTTGTCAACTTTGGAGGATGGAACAATTGTAAAGGTCCTTGCTGGACTTCCTTCAGAGGGACCTGTTATATATGTTGGGAGAAATGATGCTGGACTACTGCCAGATTTAGCTTCTTTTGATTCTCTGAGAGTTATGGGTGCTGTTCCTGTTGCTGCAACTAACCTATTCAAGCTTTTGTCTTCCAAGTCTCTTATCTTATTATATCCTGGAGGGATGCGCGAGGCTCTTCACAGGAAGGTAAATTCCAATATGTAG 3030 0.4224 MKACTKKISCRSFAKLTHPKPHLHVRTPIDASIIKTGFMPQTCRFNFLIRACVQRGELRRARKLFDGMPHRNTFSANMMIMGYIQSGDLATATNLFDGMDDRNAVSWTMLIGGYAQNNRFREAFGLFVEMCRHGVEPDYVTFSTLLSGFTEFDSVNEVTQVHAYVVKLGHNSAMVVSNSLLDSYCKTRSLGLACQLFEHMPMKDSVTYNALMAGYSKEGLNHEALNLFFRMQDLEFKPTEFTFATVLCCGIQLDDIEFGQQVHSLLLKTNFVWNVFVANALLDFYSKHDRVAEAQKLFNEMPELDGISYNVLITCYVWNGRFKESIELFRELHLTRFNRRQFPYATLLSMAANALNLEMGRQIHSQAIVTAAISDNMIGNSLVDMYAKCDRFGEANRIFANLALQSSVPWTALISGNVQKGHPEEGIKLFIEMQRAEKTADAATYASILKACANLASQALGKQLHSHIIRSGCLSNVFSGSALLDMYAKCGSIENALQMFQEMPVRNSVSWNALISAYAQNGDGENTLRSFEQMVHSGLKPNAVSFLSVLCACSHCGLVEEGLQYFNSMTQIYEVTPKREHYTSMVDMLCRSGRFEEAVKMMAQMPFEPDEIMWSSVLNSCRIHKNQELAKKAADQLFSMKELRDAAPYVSMANIYAEIGEWENVGKVKTAMRSRGIRKVPAYSWVEIKHKTHVFSANNKSHPQMKEITRKLDDLEKQMEKEGYKPDLSCALHNEDNELKAESLKYHSERIAIAYALISTSEGSPIVVMKNIRACTNCHAAIKAISKIVGREITALADILPKETLLWKLKLLRSASAYANSRLHAVKAQALILSSEKDELLPSKEEGERLRKLLANSELCKFADSGYFLFLEGNIDLVTVIKGTSFYCCVKKHDYVSDYIPPTPTEFKEVLNSYRLLNTLTSPVMLSTLEDGTIVKVLAGLPSEGPVIYVGRNDAGLLPDLASFDSLRVMGAVPVAATNLFKLLSSKSLILLYPGGMREALHRKVNSNM 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Aip06g02670 1009 PANTHER - 26 340 - -
Aip06g02670 1009 Coils Coil 705 725 - -
Aip06g02670 1009 Pfam PPR repeat 307 332 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat 75 102 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat 279 303 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat 481 506 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat 45 71 IPR002885 -
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Aip06g02670 1009 Pfam E motif 624 687 IPR046848 -
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Aip06g02670 1009 Gene3D Tetratricopeptide repeat domain 248 373 IPR011990 GO:0005515
Aip06g02670 1009 Gene3D Tetratricopeptide repeat domain 575 753 IPR011990 GO:0005515
Aip06g02670 1009 Gene3D Tetratricopeptide repeat domain 459 574 IPR011990 GO:0005515
Aip06g02670 1009 Gene3D Tetratricopeptide repeat domain 33 164 IPR011990 GO:0005515
Aip06g02670 1009 Gene3D Tetratricopeptide repeat domain 374 458 IPR011990 GO:0005515
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 506 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat family 103 149 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat family 407 454 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat family 203 248 IPR002885 -
Aip06g02670 1009 Pfam PPR repeat family 507 553 IPR002885 -
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 608 IPR002885 -
Aip06g02670 1009 PANTHER - 439 758 - -
Aip06g02670 1009 SUPERFAMILY TPR-like 304 605 IPR011990 GO:0005515
Aip06g02670 1009 TIGRFAM PPR: pentatricopeptide repeat domain 582 606 IPR002885 -
Aip06g02670 1009 TIGRFAM PPR: pentatricopeptide repeat domain 509 543 IPR002885 -
Aip06g02670 1009 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Aip06g02670 1009 TIGRFAM PPR: pentatricopeptide repeat domain 307 333 IPR002885 -
Aip06g02670 1009 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Aip06g02670 1009 PANTHER OS01G0913400 PROTEIN-RELATED 26 340 - -
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Aip06g02670 1009 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Aip06g02670 1009 PANTHER OS01G0913400 PROTEIN-RELATED 343 433 - -
Aip06g02670 1009 PANTHER OS01G0913400 PROTEIN-RELATED 439 758 - -
Aip06g02670 1009 Pfam DYW family of nucleic acid deaminases 723 794 IPR032867 GO:0008270
Aip06g02670 1009 Pfam PPR repeat 581 605 IPR002885 -
Aip06g02670 1009 PANTHER - 343 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02670 Aip-Chr6 116535127 116539278 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02670 35 794 Glycoside Hydrolase AT3G49170 32.737 1.32e-140 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02670 - - gmx:100793014 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02670 06 116535127 116539278 Aip06g02670 06 116535127 116539278 ECH