Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03676 ATGAAATTCCTTAAAATCTTCAAATCCAAACCCTTCAATCTTCGAACTTTCAGTTCCCGCTCCCTTCCCACAACCGTTTCACCAATCACAGAATCAGAACTTCTAAATTCCATAGAATCTTCTCACTGTCATTTCATCAAACAGGCTGCGCCACACTACACTCCCTCTCTTCTCTCCTCAACTCTAACCTCCCTCCACCACAAACCCCAACTCGTCCTTCAGCTTCTATCCCATCTCAACGGCCATTCCCTCGACTTAACCACCTCTTCTCTTGCTGCTTGCATCCTCTGTCGCCTCCCATCTCCCAAACCCTCTATCAGCCTCTTACAGAGCCTCATTCTATCTTCCACTGCCACCAACAGAACAATTTTCCATGAGTTGGAACTTTCCCTCGACCGCTTGGATTCCAAGACTAATCTTATCTTTGACCTTCTGGTCAGGGCCTATTGTGAACTCAAGAAGCCCAATGAGGCCTTGGAGTGTTTCTACTTGATGAAGGAAAAGGGTGTTGAGCCCAACATTAAGACTTGTAATCAGATGTTGAGTCTGTTTTTGACACTGAACAGAACTCAGATGGCTTGGGTTTTGTATGCTAAGATGTTTAGGATGAAGATAAAATGTAGTGTGTACACTTTCAACATCATGGTTAATGTGCTATGCAAAGAAGGAAAGTTGAAGAAGGCAAAGGAGTTTATTGCGTACATGGAGGCTCTTGGGGTGAAGCCTAATGTTGTCACATATAACACTGTTATACATGGACACTGTTTGAGAGGGAAGTTCCAAATGGCCCGTGTGATCTTTCAAACAATGAAAGATAAAGGTCTTGAGCCTGATTGCTATACGTATAATTTTTTCATATCTGGGTTGTGTAAAGAAGGAAGACTCGAGGAGGCATCTGGTTTACTTTGTAAAATGTTAGAATTTGGTTTGGTTCCAAATGCACTAACATATAATGCGTTGATTTATGGGAATAGAATGAAAGAAGCAGATGCCTTGTTTAATAAGGTTCAACAAGAAGGTCTGTTGGTAGATACTTTAATGTTTAACGCGTTGATGGTTGGTCACTGTGTAAATGGTAATATTGATAGTGCATTTCAACTCTTGAAACTCATGGATAACATGAAGGTTCATCCTGATGAAATCACTTATAACGCCTTGATGCACGGATACTGCAAAGAGGGGAAAGTGGAAGAAGCTAGGAAACTTCTTGATGAGATGAAGAGAAGGGGGATCAAACCTGGTCACATTAGTTACAACACACTCATTAGTGGTTACAGCAAAAGAGGTGATATGAAGGATGCTTTTAGAGTTCGGGATGAAATGATGACTACAGGATTTGATCCTACAATTCTCACTTACAATGTTCTTATACAAGGATTGTGCAAAAATCGGGAAGGTGAGCATGCTGAAGAGCTCCTCAAAGAAATGGTAAGTAAAGGCATTACTCCTGACGAGAACACCTACCTATCTATAATTGAGGCGATGGAGAAAGTTGATGACCTGGAGGAAAATGTTGATAAATGA 1524 0.4121 MKFLKIFKSKPFNLRTFSSRSLPTTVSPITESELLNSIESSHCHFIKQAAPHYTPSLLSSTLTSLHHKPQLVLQLLSHLNGHSLDLTTSSLAACILCRLPSPKPSISLLQSLILSSTATNRTIFHELELSLDRLDSKTNLIFDLLVRAYCELKKPNEALECFYLMKEKGVEPNIKTCNQMLSLFLTLNRTQMAWVLYAKMFRMKIKCSVYTFNIMVNVLCKEGKLKKAKEFIAYMEALGVKPNVVTYNTVIHGHCLRGKFQMARVIFQTMKDKGLEPDCYTYNFFISGLCKEGRLEEASGLLCKMLEFGLVPNALTYNALIYGNRMKEADALFNKVQQEGLLVDTLMFNALMVGHCVNGNIDSAFQLLKLMDNMKVHPDEITYNALMHGYCKEGKVEEARKLLDEMKRRGIKPGHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNVLIQGLCKNREGEHAEELLKEMVSKGITPDENTYLSIIEAMEKVDDLEENVDK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03676 507 Gene3D Tetratricopeptide repeat domain 397 506 IPR011990 GO:0005515
Vimu6g03676 507 Gene3D Tetratricopeptide repeat domain 228 324 IPR011990 GO:0005515
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Vimu6g03676 507 Pfam PPR repeat 144 170 IPR002885 -
Vimu6g03676 507 Pfam PPR repeat 347 373 IPR002885 -
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 452 485 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 245 279 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 416 449 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 347 380 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 142 174 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 381 413 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 280 314 IPR002885 -
Vimu6g03676 507 NCBIfam pentatricopeptide repeat 210 244 IPR002885 -
Vimu6g03676 507 SUPERFAMILY HCP-like 147 309 - -
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vimu6g03676 507 Coils Coil 491 507 - -
Vimu6g03676 507 Pfam PPR repeat family 242 291 IPR002885 -
Vimu6g03676 507 Pfam PPR repeat family 172 221 IPR002885 -
Vimu6g03676 507 Pfam PPR repeat family 414 462 IPR002885 -
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Vimu6g03676 507 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 324 503 - -
Vimu6g03676 507 SUPERFAMILY HCP-like 254 455 - -
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vimu6g03676 507 Gene3D Tetratricopeptide repeat domain 121 227 IPR011990 GO:0005515
Vimu6g03676 507 Gene3D Tetratricopeptide repeat domain 325 395 IPR011990 GO:0005515
Vimu6g03676 507 Pfam PPR repeat 376 407 IPR002885 -
Vimu6g03676 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03676 Vimu-Chr6 34606500 34614894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03676 142 503 Glycosyltransferase AT1G05670 28.142 6.25e-57 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03676 - - vun:114172886 635.565