Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1853 ATGCTCAGAAGATTAGCCAGGGAGTTCAAGCTCACGACCCTTACCAATGGTTTGCTTAAAAAACGCAGCAGATTCTATGCAACGGTTGGTGGAAGAAGGCTAGTGGGAAAAGTAGCACTCATAACAGGGTCAGCAAGTGGACTTGGCAAGGCCACAGCCCATGAGTTTGTCCAACATGGGGCCCAAGTCATCATTGCTGACAACGATACAAAACTAGGCCCAAAGGTTGTCAAAGAATTGGGCCCTTCAGCCCAATATGTGGAATGTGATGTCACTGTTGAGGCACAAGTAGCAGAAGCTGTGAATGTTGCGATTACCCACTACGGCAAATTGGATATCATGTTCAACAATGCTGGCATAACAGGCCCAACAATCCCACCAAGCATAGCACAGCTGGACCTTGATGAGTTTGATAGGGTGATGAGGATCAATGTCTGGGGAATGGTTGCAGGTATAAAGCATGCTGCCCGTGTCATGATACCAGTGGGCTCTGGGTCAATTCTATGCACATCCAGCATAAGTGGGCTCATGGGTGGGCTTGGGCCTCATCCATACACAATATCAAAATTTACTATTCCTGGGATAGTGAAGTCTGTTGCTAGTGAGCTATGCAAAACTGGGATCAGAGTCAATTGCATATCCCCAGCCCCAATTCCAACACCTATGTCCTTGACCCAAATAGGGAAATTTCTTCCTGGTCTAACCCAAGAACAAATTGGGGACATTGTGAGTGGGCTTGGTGAGCTCAAGGGTGCAAAGTGTGAGGACATTGATGTGGCCCGGGCTGCACTATTCTTGGCATCTGATGATGCAAAGTACATCTCAGGCCACAACCTGATTGTGGATGGAGGGTTCACCAGCTTTAAAAATCTCAGGTTCCCTACTCCAGATGGAACTGGCTAA 903 0.4762 MLRRLAREFKLTTLTNGLLKKRSRFYATVGGRRLVGKVALITGSASGLGKATAHEFVQHGAQVIIADNDTKLGPKVVKELGPSAQYVECDVTVEAQVAEAVNVAITHYGKLDIMFNNAGITGPTIPPSIAQLDLDEFDRVMRINVWGMVAGIKHAARVMIPVGSGSILCTSSISGLMGGLGPHPYTISKFTIPGIVKSVASELCKTGIRVNCISPAPIPTPMSLTQIGKFLPGLTQEQIGDIVSGLGELKGAKCEDIDVARAALFLASDDAKYISGHNLIVDGGFTSFKNLRFPTPDGTG* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1853 300 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 297 - -
Dod01g1853 300 PANTHER ALCOHOL DEHYDROGENASE-LIKE PROTEIN 12 297 - -
Dod01g1853 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
Dod01g1853 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Dod01g1853 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
Dod01g1853 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 286 IPR036291 -
Dod01g1853 300 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Dod01g1853 300 PRINTS Glucose/ribitol dehydrogenase family signature 249 269 IPR002347 -
Dod01g1853 300 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Dod01g1853 300 PRINTS Glucose/ribitol dehydrogenase family signature 185 204 IPR002347 -
Dod01g1853 300 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Dod01g1853 300 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Dod01g1853 300 Gene3D - 27 292 - -
Dod01g1853 300 Pfam Enoyl-(Acyl carrier protein) reductase 43 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1853 Dod-Chr1 53271134 53274235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1853 33 286 Acyl Lipid Metabolism Gene Families AT1G63380 30.189 4.00e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1853 - - gmx:100808525 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1853 01 53271134 53274235 Dod01g1853 01 53271134 53274235 ECH