Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2271 ATGAATAACATAATAAAACCATGTACGAGGAATCTTGTCACGACGCTAACTGCTCCAAAACCTCACCTTCACGTCGACGCTTCCATCATAAAAACAGGCTTCAATCCCAACACATACCGTTCCAACTTCCTCGTCAAGTCATTTCTCCAACGTGGCGATTTAAACGGTGCACGTAAACTGTTTGATGAAATGCCCCACAAGAACATATTCTCCACCAATACCATGATCATGGGTTACATTAAATCAGGCAATCTTTCCGAAGCTAGAACCTTGTTTGATTCCATGTTTCAACGCACTGCTGTTACGTGGACAATGTTGATCGGTGGATATGCTCAAAATAATCAATTTCGTGAAGCCTTTGGACTTTTTATCGAAATGGGTAGGCATGGGATCGACCCGGATCATGTTAGTTTGGCAACTTTGTTATCCGGGTTTACTGAGTTTGATTCTGTTAATGAAGTGAGACAGGTTCATAGTCATGTTATCAAATTGGGATACGACTCGACGCTTGTTGTTTCTAACTCGTTGCTTGATTCTTACTGTAAGACTCGCAGCCTCGGATTAGCGTTTCAACTGTTTAATGATATACCTGAGAGAGATTCTGTTACTTTTAATGCCTTGTTGACGGGGTACTCGAAAGAAGGGTTTAATCGTGAAGCCATAAACCTGTTTTTCAAGATGCAGGAAGTGGGGTATAGGCCGACGGAGTTTACTTTTGCAGCAATTTTAACAGCAGGTATACAGTTGGATGATATAGAATTTGGTCAACAAGTTCATGGTTTTGTAGTGAAGTGTAACTTTGTTTGGAATGTGTTTGTGGCTAATGCTTTGCTTGATTTTTACTCGAAGCATGATCGGGTTGTTGAAGCAAGTAAGCTTTTTTATGAGATGCCGGAGGTGGATGGTATCTCTTACAATGTGCTTGTCACGTGTTATGCGTGGAATGGAAGAGTGAAAGAATCTCTTGAACTATTCAAGGAGTTACAGTTCACTGGATTTGACAGAAGGAATTTCCCATTTGCTACATTGTTAAGCATAGCTGCAATATCTTTAAACCTTGATATAGGTAGGCAAATTCATTCCCAGACTATTGTAACGGATGCGATTTCAGAAATTCTCGTAGGGAATTCTTTGGTTGACATGTATGCTAAATGTGGCGAATTTGGGGAAGCAAATAGGATTTTTTCAGATCTGGCTATTCAAAGTTCAGTTCCATGGACAGCCATGATCTCATCTTATGTCCAGAAGGGGCTTCATGAAGATGGTCTAAAGCTGTTCGTTGAGATGCAAAGAGCCAAAATAGGTGCCGACGCAGCCACTTATGCCAGCATTGTAAGAGCATGTGCTAGTTTAGCCTCATTGACGCTAGGAAAGCAGTTACACTCGCATATAATTGGATCAGGATACATTTCAAATGTATTTTCTGGGAGTGCACTTGTTGACATGTATGCAAAATGTGGATCCATAAAAGATGCACTTCAAATGTTTCAAGAGATGCCTGTAAGAAATTCAGTTTCCTGGAATGCACTGATTTCAGCTTATGCACAAAACGGAGACGGTGACTGCACCCTTAGATTGTTTGAAGAAATGGTTCGTTCTGGATTGCAGCCAGATTCTGTTAGCCTTCTTAGCATTCTGTGCGCTTGCAGTCACTGTGGTCTAGTTGAAGAAGGTTTACAATACTTCGACTCCATGACTCGAATTTATAAACTTGTTCCCAAGAAAGAGCATTATGCATCAACCATTGATATGTTATGCCGCGGTGGAAGATTTGATGAGGCGGAGAAATTGATGGCTCAGATGCCTTTTGAACCTGATGAAATAATGTGGTCATCAGTTCTCAACTCGTGCGGAATCCATAAAAATCAAGAGTTGGCAAAGAAAGCAGCAAACCAACTATTCAATATGAAGGTACTTAGAGATGCTGCTCCATATGTTACCATGTCCAATATCTATGCAGCAGCTGGTGAATGGGACAATGTAGGAAAGGTGAAGAAAGCAATGAGAGAAAGAGGTGTGAAAAAAGTCCCTGCTTATAGTTGGGTTGAAATCAAACACAAAACTCATGTTTTCACAGCCAATGATAAGACTCATCCACAGATGAGAGAGATAATGAAGAAGCTTGATGAATTGGAAGAGAAAATGGTGAAAAAAGGGTATAAACCAGATTCAAGCTGTGCCCTTCACAATGTGGATGAGGAAGTGAAGGTAGAGTCTCTTAAATATCACAGTGAACGCATTGCCATTGCCTTTGCGCTAATTAGCACCCCGGAAGGGTCACCTATACTGGTGATGAAAAACCTGAGAGCTTGTACTGATTGCCATGCCGCCATCAAGGTAATCTCGAAGATCGTCCGTCGAGAAATTACGGTTAGAGATTCAAGCAGGTTCCATCATTTCAGGGATGGGTTTTGCACTTGTAGGGACTACTGGTAG 2436 0.4126 MNNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2271 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 502 IPR002885 -
Mtr7g2271 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Mtr7g2271 811 TIGRFAM PPR: pentatricopeptide repeat domain 72 95 IPR002885 -
Mtr7g2271 811 TIGRFAM PPR: pentatricopeptide repeat domain 505 539 IPR002885 -
Mtr7g2271 811 TIGRFAM PPR: pentatricopeptide repeat domain 478 502 IPR002885 -
Mtr7g2271 811 TIGRFAM PPR: pentatricopeptide repeat domain 406 437 IPR002885 -
Mtr7g2271 811 TIGRFAM PPR: pentatricopeptide repeat domain 303 333 IPR002885 -
Mtr7g2271 811 TIGRFAM PPR: pentatricopeptide repeat domain 101 134 IPR002885 -
Mtr7g2271 811 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Mtr7g2271 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Mtr7g2271 811 PANTHER - 23 334 - -
Mtr7g2271 811 PANTHER - 432 753 - -
Mtr7g2271 811 PANTHER - 340 429 - -
Mtr7g2271 811 Pfam PPR repeat family 100 145 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat family 200 244 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat family 403 449 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat family 503 549 IPR002885 -
Mtr7g2271 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Mtr7g2271 811 PANTHER OS01G0913400 PROTEIN-RELATED 340 429 - -
Mtr7g2271 811 PANTHER OS01G0913400 PROTEIN-RELATED 432 753 - -
Mtr7g2271 811 PANTHER OS01G0913400 PROTEIN-RELATED 23 334 - -
Mtr7g2271 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Mtr7g2271 811 Gene3D Tetratricopeptide repeat domain 455 570 IPR011990 GO:0005515
Mtr7g2271 811 Gene3D Tetratricopeptide repeat domain 249 369 IPR011990 GO:0005515
Mtr7g2271 811 Gene3D Tetratricopeptide repeat domain 571 749 IPR011990 GO:0005515
Mtr7g2271 811 Pfam E motif 620 683 IPR046848 -
Mtr7g2271 811 Pfam E+ motif 688 715 IPR046849 -
Mtr7g2271 811 Gene3D Tetratricopeptide repeat domain 25 148 IPR011990 GO:0005515
Mtr7g2271 811 Gene3D Tetratricopeptide repeat domain 370 454 IPR011990 GO:0005515
Mtr7g2271 811 Gene3D Tetratricopeptide repeat domain 149 248 IPR011990 GO:0005515
Mtr7g2271 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 98 IPR002885 -
Mtr7g2271 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 376 397 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 579 601 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 42 69 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 303 329 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 71 96 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 173 199 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 477 502 IPR002885 -
Mtr7g2271 811 Pfam PPR repeat 275 299 IPR002885 -
Mtr7g2271 811 Pfam DYW family of nucleic acid deaminases 719 811 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2271 Mtr-Chr7 39104063 39109008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2271 52 811 Glycoside Hydrolase AT3G49170 33.290 2.28e-149 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2271 - - gmx:100793014 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2271 7 39104063 39109008 Mtr7g2271 7 39104063 39109008 ECH