Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03679 ATGCTCACAACACTAACCAGGGTGTTCAAGCACACCACCCTAGCCAATTTGCTTCAAAAGAGCAGTAGATTCTATGCAACTATGGTTGGTGAAAGAAGCAGGCTAGAGGGAAAAGTGGCAATCATAACAGGCTCAGCAAGTGGACTTGGCAAGGCCACGGCCCATCACTTTGTCCACCATGGGGCCCAAGTCATCATTGCTGACAATGACACCATCCTTGGCCCACAAGTTGCAAAGGACTTGGGCCCATCAGCCCGTTATGTGGAATGTGATATTTCTGTGGAGGCCCAAGTTGAAGAAGCTGTGAATGTTGCCATGACCCACTATGGCAAGCTGGACATCATGTACAACAATGCTGGCATCCCAGGCCCATCATTTCCCCCAAGCATAGCAGATCTAGACCTTGATGAGTTTGACAAAGTCATGAGAATCAACATAAGGGGAATGCTTGCTGGTATAAAGCATGCAGCCCGGGTGATGATACCCATGGGCTCAGGCTCCATTCTATGCACATCAAGCATAAGTGGGGTAATGGGTGGGCTTGGGCCTCATCCTTATACCATATCAAAGTTTACAATACCTGGTGTAGTGAAATCTGTGGCCAGTGAGTTATGCAAAGTTGGGGTGAGGATCAATTGCATATCACCAGCTCCAATTCCTACACCTATGGTTATGGCTCAAATACAAAAGTTTTATCCTGGTTTACCCCAAGAACAGATAGAGGGTATTGTGAATGGTTTTGTTGGGTTCAAAGGTGCTAAGTGTGAGGACATTGATGTGGCAAAGGCTGCATTGTATTTGGCATCAGATGAAGCAAAGTTTATCTCAGGTCACAATCTCATAGTTGATGGAGGCTTCACCAGCTTTAAAACTCTCACATTCCCTTCTCCATAA 894 0.462 MLTTLTRVFKHTTLANLLQKSSRFYATMVGERSRLEGKVAIITGSASGLGKATAHHFVHHGAQVIIADNDTILGPQVAKDLGPSARYVECDISVEAQVEEAVNVAMTHYGKLDIMYNNAGIPGPSFPPSIADLDLDEFDKVMRINIRGMLAGIKHAARVMIPMGSGSILCTSSISGVMGGLGPHPYTISKFTIPGVVKSVASELCKVGVRINCISPAPIPTPMVMAQIQKFYPGLPQEQIEGIVNGFVGFKGAKCEDIDVAKAALYLASDEAKFISGHNLIVDGGFTSFKTLTFPSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03679 297 FunFam Short-chain dehydrogenase reductase 26 291 - -
Vimu6g03679 297 Gene3D - 26 293 - -
Vimu6g03679 297 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 32 290 - -
Vimu6g03679 297 Pfam Enoyl-(Acyl carrier protein) reductase 44 287 - -
Vimu6g03679 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 110 121 IPR002347 -
Vimu6g03679 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
Vimu6g03679 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 205 IPR002347 -
Vimu6g03679 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 287 IPR036291 -
Vimu6g03679 297 PRINTS Glucose/ribitol dehydrogenase family signature 110 121 IPR002347 -
Vimu6g03679 297 PRINTS Glucose/ribitol dehydrogenase family signature 186 205 IPR002347 -
Vimu6g03679 297 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Vimu6g03679 297 PRINTS Glucose/ribitol dehydrogenase family signature 250 270 IPR002347 -
Vimu6g03679 297 PRINTS Glucose/ribitol dehydrogenase family signature 207 224 IPR002347 -
Vimu6g03679 297 PRINTS Glucose/ribitol dehydrogenase family signature 160 176 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03679 Vimu-Chr6 34641226 34644923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03679 35 287 Acyl Lipid Metabolism Gene Families AT1G63380 29.658 1.58e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03679 - - gmx:100808525 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03679 6 34641226 34644923 Vimu6g03679 6 34641226 34644923 ECH