Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1466 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1467 . . . . Adu09g03131 . . . . . . . . . . . . . . Apr6g1351 Arst9g04203 . . . . . . . . . . . . . . . . . . . Gma10g02088 Gma20g01626 . . . . . . Lal13g0094 . Lal24g0089 . . . Lan20g0110 . Lan20g0110 . . . Lapu7g01889 . Lasa6g03866 . . . . . . . . . Lja5g0799 . . . Mepo4g04085 . . . . . . . Phac7g01348 . . . . . . . Pste4g02385 . Pte16g00427 . . . Pumo3g01207 . Pvu7g0894 . Rops6g02524 . Seca8g07195 . Spst10g00766 . . . . . . . Trre1g05137 . . . Vian3g00781 . Vifa3g02697 . Vimu3g02845 . Viun7g03011 . Vivi1g04634 . . .
Vvi18g1468 . . . . . . . . . . Ahy19g2734 . Aip09g03196 . . . Amo19g3462 . . Apr6g1419 . . Bach1g00175 . . . . . Car04g01062 . . . . . Dod06g0955 . . . . . . . Gma16g01436 . . . . . . . . . . Lal9g0882 . . . . . . . . . . . . . . . . . . . Lja2g2858 . . . . . . . . . . . . Phco5g01092 . . . Psa6g4299 . . . . Pte9g00492 . . Pumo6g02273 . Pvu4g0918 . Rops5g01188 . . . Spst4g03452 . . . . . . . . . . . Vian8g00806 . . . Vimu8g00139 . Viun4g01668 . . . . .
Vvi18g1469 . . . . Adu09g03129 . . . Aev09g2075 . Ahy19g2735 . Aip09g03197 . . . Amo19g3463 . . . Arst9g04202 . . . . . . . Car04g01063 . . . . . Dod06g0954 . . . . . Gma10g02090 Gma20g01624 . . Gso10g1957 Gso10g1957 . . . Lal12g0116 . . . . . . . . . . Lapu7g01890 . Lasa6g03869 . . . . . . . . . Lja5g0798 . Mal1g2230 . Mepo4g04086 . Mesa1g04430 . . . Mtr1g3571 . Phac7g01334 . Phco6g02279 . . . Psa6g4301 . Pste4g02386 . Pte16g00426 Pte9g00491 . . Pumo3g01204 . Pvu7g0893 . Rops6g02526 . Seca8g07197 . Spst10g00767 . . . . . Tpr1g0920 . Trre1g05139 . Tsu01g04231 . Vian3g00780 . Vifa3g02700 . Vimu3g02846 . Viun7g03013 . Vivi1g04632 . . .
Vvi18g1470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1471 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1472 . . . . . . . . Aev09g2076 . . . Aip09g03200 . . . Amo19g3499 . . . . . . . . . . . Car04g01064 . . . . . Dod06g0953 . . . . . Gma10g02093 Gma20g01623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g2229 . . . . . . . Mtr1g3572 . . . . . . . Psa6g4302 . . . . . . . . . . . . . . . . . . . . Sto8g2855 Tpr1g0919 . . . Tsu01g04232 . . . . . . . . . . . . .
Vvi18g1473 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1474 . . . . Adu05g03558 . . . . . . . Aip09g00082 . . . . . . Apr6g1420 Arst5g04568 . . . . . . . . . . . . . . . . . . . Gma10g02094 . Gma16g01437 . Gso10g1958 . Gso10g1958 . . . . Lal1g0892 Lal2g1025 . . . . . . . . . Lasa1g02688 . . . . . . . . . . Lja2g2856 . . . . . . . . . . . . Phco5g01091 . . . . . Pste9g00908 . Pte16g00424 . . . Pumo6g02275 . Pvu4g0919 . Rops5g01187 . Seca10g03482 . Spst4g03451 . . . . Sto8g2856 . . Trre11g01078 . . . Vian8g00802 . . . Vimu8g00142 . Viun4g01670 . . . . .
Vvi18g1475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pste Pste4g02385 Chr4 16987404 16990062 +
Lal Lal24g0089 Chr24 588563 591406 -
Vvi Vvi18g1466 Chr18 18007387 18007905 -
Vvi Vvi18g1467 Chr18 18020025 18027899 +
Adu Adu09g03131 Chr09 119252887 119255477 -
Apr Apr6g1351 Chr6 19529413 19530816 +
Arst Arst9g04203 Chr9 117136643 117139364 -
Gma Gma10g02088 Chr10 48430026 48436561 +
Gma Gma20g01626 Chr20 43344679 43350807 -
Lal Lal13g0094 Chr13 608375 611280 -
Lal Lal24g0089 Chr24 588563 591406 -
Lan Lan20g0110 Chr20 662345 665194 -
Lan Lan20g0110 Chr20 662345 665194 -
Lapu Lapu7g01889 Chr7 34924289 34927687 +
Lasa Lasa6g03866 Chr6 600157268 600159812 +
Lja Lja5g0799 Chr5 7415338 7418599 -
Mepo Mepo4g04085 Chr4 50533506 50536939 +
Phac Phac7g01348 Chr7 9011836 9015826 -
Pste Pste4g02385 Chr4 16987404 16990062 +
Pte Pte16g00427 Chr16 6105812 6109937 -
Pumo Pumo3g01207 Chr3 19341609 19344679 -
Pvu Pvu7g0894 Chr7 8722488 8725714 -
Rops Rops6g02524 Chr6 45714515 45716544 +
Seca Seca8g07195 Chr8 168277351 168278016 +
Spst Spst10g00766 Chr10 8048418 8051397 +
Trre Trre1g05137 Chr1 57588645 57591504 +
Vian Vian3g00781 Chr3 8203587 8206556 -
Vifa Vifa3g02697 Chr3 746844105 746846847 +
Vimu Vimu3g02845 Chr3 42653434 42656365 +
Viun Viun7g03011 Chr7 33092584 33095950 +
Vivi Vivi1g04634 Chr1 98865818 98869064 -
Vvi Vvi18g1468 Chr18 18028102 18028743 -
Ahy Ahy19g2734 Chr19 148723275 148723976 -
Aip Aip09g03196 Chr09 137427716 137428933 -
Amo Amo19g3462 Chr19 148153644 148154349 -
Apr Apr6g1419 Chr6 22455713 22456363 -
Bach Bach1g00175 Chr1 2149110 2149751 -
Car Car04g01062 Chr04 10778760 10779354 -
Dod Dod06g0955 Chr06 12134392 12134867 +
Gma Gma16g01436 Chr16 33457241 33457900 -
Lal Lal9g0882 Chr9 6620425 6622772 +
Lja Lja2g2858 Chr2 46269814 46270954 +
Phco Phco5g01092 Chr5 40575435 40576094 +
Psa Psa6g4299 Chr6 380938615 380939232 -
Pte Pte9g00492 Chr9 6177492 6178363 +
Pumo Pumo6g02273 Chr6 43457912 43458906 -
Pvu Pvu4g0918 Chr4 17718244 17718903 -
Rops Rops5g01188 Chr5 25331402 25332058 +
Spst Spst4g03452 Chr4 75014140 75014796 +
Vian Vian8g00806 Chr8 17135316 17135984 +
Vimu Vimu8g00139 Chr8 5320556 5321221 -
Viun Viun4g01668 Chr4 30417275 30418107 -
Vvi Vvi18g1469 Chr18 18029846 18041590 -
Adu Adu09g03129 Chr09 119242898 119251596 +
Aev Aev09g2075 Chr09 23908910 23918559 -
Ahy Ahy19g2735 Chr19 148724375 148733641 -
Aip Aip09g03197 Chr09 137429388 137438451 -
Amo Amo19g3463 Chr19 148154752 148164020 -
Arst Arst9g04202 Chr9 117126749 117135431 +
Car Car04g01063 Chr04 10782259 10792766 -
Dod Dod06g0954 Chr06 12123568 12134303 +
Gma Gma10g02090 Chr10 48440241 48448662 -
Gma Gma20g01624 Chr20 43331742 43340096 +
Gso Gso10g1957 Chr10 46566302 46576639 -
Gso Gso10g1957 Chr10 46566302 46576639 -
Lal Lal12g0116 Chr12 777243 786426 +
Lapu Lapu7g01890 Chr7 34928406 34939106 -
Lasa Lasa6g03869 Chr6 600299349 600308065 -
Lja Lja5g0798 Chr5 7402605 7412941 +
Mal Mal1g2230 Chr1 29466020 29475086 +
Mepo Mepo4g04086 Chr4 50553023 50564579 -
Mesa Mesa1g04430 Chr1 69945258 69954494 -
Mtr Mtr1g3571 Chr1 47424778 47436249 -
Phac Phac7g01334 Chr7 8955794 8966422 +
Phco Phco6g02279 Chr6 44038366 44047347 -
Psa Psa6g4301 Chr6 380957675 380968930 -
Pste Pste4g02386 Chr4 16992989 17003367 -
Pte Pte16g00426 Chr16 6101175 6104330 +
Pte Pte9g00491 Chr9 6165849 6175863 +
Pumo Pumo3g01204 Chr3 19326007 19334112 +
Pvu Pvu7g0893 Chr7 8703542 8714219 +
Rops Rops6g02526 Chr6 45719843 45730106 -
Seca Seca8g07197 Chr8 168280529 168293776 -
Spst Spst10g00767 Chr10 8052826 8067070 -
Tpr Tpr1g0920 Chr1 7855252 7866389 +
Trre Trre1g05139 Chr1 57594607 57603722 -
Tsu Tsu01g04231 Chr01 50152682 50163443 -
Vian Vian3g00780 Chr3 8188984 8197839 +
Vifa Vifa3g02700 Chr3 747707090 747716226 -
Vimu Vimu3g02846 Chr3 42658614 42669742 -
Viun Viun7g03013 Chr7 33099089 33109683 -
Vivi Vivi1g04632 Chr1 98840482 98851302 +
Vvi Vvi18g1470 Chr18 18076976 18078402 +
Vvi Vvi18g1471 Chr18 18121292 18122034 -
Vvi Vvi18g1472 Chr18 18137137 18146114 -
Aev Aev09g2076 Chr09 23932440 23935618 -
Aip Aip09g03200 Chr09 137517255 137521146 -
Amo Amo19g3499 Chr19 148856784 148860728 -
Car Car04g01064 Chr04 10803732 10805412 -
Dod Dod06g0953 Chr06 12097828 12103915 +
Gma Gma10g02093 Chr10 48466944 48468365 -
Gma Gma20g01623 Chr20 43307605 43312233 +
Mal Mal1g2229 Chr1 29438945 29446264 +
Mtr Mtr1g3572 Chr1 47454655 47462286 -
Psa Psa6g4302 Chr6 381065373 381082859 -
Sto Sto8g2855 Chr8 20781879 20787033 -
Tpr Tpr1g0919 Chr1 7828627 7835522 +
Tsu Tsu01g04232 Chr01 50185411 50192326 -
Vvi Vvi18g1473 Chr18 18213254 18213988 -
Vvi Vvi18g1474 Chr18 18227498 18232005 +
Adu Adu05g03558 Chr05 108046568 108053458 -
Aip Aip09g00082 Chr09 662768 669601 +
Apr Apr6g1420 Chr6 22506866 22511514 +
Arst Arst5g04568 Chr5 106724509 106727560 -
Gma Gma10g02094 Chr10 48471031 48473333 +
Gma Gma16g01437 Chr16 33458650 33465611 +
Gso Gso10g1958 Chr10 46597035 46599926 +
Gso Gso10g1958 Chr10 46597035 46599926 +
Lal Lal1g0892 Chr1 6373390 6378689 -
Lal Lal2g1025 Chr2 7004653 7010174 -
Lasa Lasa1g02688 Chr1 516795572 516800824 -
Lja Lja2g2856 Chr2 46192847 46197997 -
Phco Phco5g01091 Chr5 40551706 40559405 -
Pste Pste9g00908 Chr9 5333532 5339267 +
Pte Pte16g00424 Chr16 6067842 6071310 -
Pumo Pumo6g02275 Chr6 43491177 43496132 +
Pvu Pvu4g0919 Chr4 17756004 17760433 +
Rops Rops5g01187 Chr5 25290080 25295004 -
Seca Seca10g03482 Chr10 62462938 62469807 +
Spst Spst4g03451 Chr4 75001470 75010818 -
Sto Sto8g2856 Chr8 20792879 20796834 +
Trre Trre11g01078 Chr11 10264774 10267957 +
Vian Vian8g00802 Chr8 17064874 17074168 -
Vimu Vimu8g00142 Chr8 5370580 5375261 +
Viun Viun4g01670 Chr4 30462513 30468179 +
Vvi Vvi18g1475 Chr18 18233328 18233812 -