Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0953 ATGAGTGCTCCACCACCACCACCACAACAACCACCTCCTCACGACGAAGAAGAAGACGACAACGAGGAGGTCTTCATCGACGATTCCGACATCATCCATGAAGTTGAAATGGACAATGAAGACCTTCCCGACGCCGACGACGAACACCTTGAGGACGTTGATGATTCTGTGCACATATTCACTGGTCATACTGGAGAGTTATACTCAGCTGCTTGTAGCCCCACAGATGTGGCTTTGGTGGCAACGGGGGGTGGCGACGACAGAGGATTTCTCTGGAAGATTGGCCAAGGGGATTGGGCTTCTGAGCTACAAGGTCATAAGGATTCTGTATCTACTTTAGCTTTTAGCTATGACGGACAGTTTCTTGCATCAGGAAGTTTAGATGGAACTGTTCAAGTCTGGGACGCTTCTGGAACTCTGAAATGCGTGCTGGATGGTCCTGGAGGGGGCATTGAGTGGCTCAGGTGGCATCCGAGGGGACACGTACTCTTAGCTGGTTCTGAGGATTCCACTGTCTGGATGTGGAATGCTGATAGAGCTGCCTTCCTTAATATGTTTGCTGGTCATGGCAGTAGTGTGACCTGTGGTGATTTTACTCCTGATGGGAAAATAATATGTACTGGTTCTGATGATGCAACTTTGAGAATATGGAATCCAAAAAGTGGAGAAAACATTCATGTTGTGTGGGGTCATCCATATCATACTGAGGGATTAACATGCTTGTCAATAAGTTCAAATTCAACTCTTGTCCTTACTGGTTCCAAGGATGGATCTGTCCATGTTGTGAACATCTTGACTGGGAGGGTTATTAATACGCTGGCTTCTCATTCAGATTCCGTTGAATGTGTTGGGTTTGCACCAAGTGATTCCTGGGCTGCAATTGGAAGCATGGATCAAAAACTGATCATCTGGGATATAGAGCATTCCTTATCCCGAGCCACATGTGATCATGAGGATGGAGTGACATGTTTGGCATGGCTTGGTGCATCCTGTGTTGCAACTGGATGTGTGGATGGAAATGTAAGATTATGGGATAGCCGGTCTGGTGAATGTGTAAGAACATTCAGGGGGCACTCTGATGCCATTCAATCTATTTCTGTGTCTGCTAATCGGGATTACCTTGTATCGGCTTCACTCGATGGAACAGCTCGTGTTTTTGAGGTTGAAGGCCTTCAGTAA 1179 0.4673 MSAPPPPPQQPPPHDEEEDDNEEVFIDDSDIIHEVEMDNEDLPDADDEHLEDVDDSVHIFTGHTGELYSAACSPTDVALVATGGGDDRGFLWKIGQGDWASELQGHKDSVSTLAFSYDGQFLASGSLDGTVQVWDASGTLKCVLDGPGGGIEWLRWHPRGHVLLAGSEDSTVWMWNADRAAFLNMFAGHGSSVTCGDFTPDGKIICTGSDDATLRIWNPKSGENIHVVWGHPYHTEGLTCLSISSNSTLVLTGSKDGSVHVVNILTGRVINTLASHSDSVECVGFAPSDSWAAIGSMDQKLIIWDIEHSLSRATCDHEDGVTCLAWLGASCVATGCVDGNVRLWDSRSGECVRTFRGHSDAIQSISVSANRDYLVSASLDGTARVFEVEGLQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0953 392 Pfam WD domain, G-beta repeat 223 261 IPR001680 GO:0005515
Dod06g0953 392 Pfam WD domain, G-beta repeat 316 345 IPR001680 GO:0005515
Dod06g0953 392 Pfam WD domain, G-beta repeat 349 386 IPR001680 GO:0005515
Dod06g0953 392 Pfam WD domain, G-beta repeat 185 218 IPR001680 GO:0005515
Dod06g0953 392 Pfam WD domain, G-beta repeat 102 135 IPR001680 GO:0005515
Dod06g0953 392 Pfam WD domain, G-beta repeat 143 176 IPR001680 GO:0005515
Dod06g0953 392 Pfam WD domain, G-beta repeat 269 305 IPR001680 GO:0005515
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 307 - -
Dod06g0953 392 Gene3D - 53 390 IPR015943 GO:0005515
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 223 - -
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 135 IPR001680 GO:0005515
Dod06g0953 392 PRINTS G protein beta WD-40 repeat signature 122 136 IPR020472 -
Dod06g0953 392 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Dod06g0953 392 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 314 IPR001680 GO:0005515
Dod06g0953 392 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 392 IPR001680 GO:0005515
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 96 135 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 308 345 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 137 176 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 53 93 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 179 218 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 266 305 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 348 387 IPR001680 GO:0005515
Dod06g0953 392 SMART WD40_4 221 263 IPR001680 GO:0005515
Dod06g0953 392 MobiDBLite consensus disorder prediction 1 21 - -
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 135 - -
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 392 - -
Dod06g0953 392 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 53 326 IPR011047 -
Dod06g0953 392 CDD WD40 102 387 - -
Dod06g0953 392 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 13 390 - -
Dod06g0953 392 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 13 390 - -
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 354 IPR001680 GO:0005515
Dod06g0953 392 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 316 389 IPR011047 -
Dod06g0953 392 ProSitePatterns Trp-Asp (WD) repeats signature. 292 306 IPR019775 -
Dod06g0953 392 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 176 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0953 176 392 Miscellaneous Gene Families AT5G08390 25.909 1.86e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0953 K24725 - gmx:100790414 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0953 06 12097828 12103915 Dod06g0953 06 12097828 12103915 ECH