Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0919 ATGAGTGATCCAAATCCTCATGACAGTGGTGACGAAGACAACAACAACAATGATGTTTTCATTGATGAGTCTGATATCGTCCATGAAGTTGCCTCCGACGATGATGAAGTTCTTCCCGATGCAGATGCCAATGATGCTGATGGAGATGGAGATGGCAGTTCGGAACCTGATGATGATGATGCTGAGCACATATTCACTGGTCATACTGGGGAATTATATTCAGTTGCCTGCAGCCCAACAGATACCGAACTGGTTGCAACAGGAGGTGGTGACGACAGAGGATTTCTCTGGAAGATCAATAATGGAGAGTGGGCTTCTGAGCTTAAAGGTCATGAAGAATCTGTATCTAGTTTAGGTTTTAGCCACGATGGAACGTTTCTGGCATCAGGAGGCCTTGATGGAACTATTAAAATATGGGATGCATCTGGAAATCTGAAGGGTGAACTTGAGGGTGCTGGAGGGGGCATTGAGTGGCTCAGGTGGCATCCAAGAGGAAACATGCTCATGGCTGGTTTTGAAGAATCCCCCTCGGTTTGGATGTGGAATGTTAAAAATTTGTCCATCTTTATGTCATTTGATGGCCATGCTAGTAAAGTGACTTGTGGTGATTTTACTCCCGATGGGAGAATAATATGCACTGGTTCTGACGATGCAACCTTGAGAATATGGAACCCAAAAACTGGAGAAAGCATTCATGTTGTGCGAGGTCATCCATACCACACCGAGGGAATAACATGTTTAGCAATAAATCCGGCTTCAACTATTGCTCTTACTGGTTCCCAGGATGGATCTGTTCATATTGTGAATATCACTACAGGAAGAGTTGTTAGTACCCTGCCTTCTCATTCAAGTTCCATCGAGTGTGTTGGGTTCGCACCAAGCCCACCAAACGCACCAAGTGGTTCCCGGGCAGCAATTGGAGGCTTGGATAAAATGATCATCTGGGATGTGGAGCACTCCTTAGTCCGAAGCACTTGTGAGCACGAGTATGGAGTGACATGCTTAATATGGCTTGGAACATCATATGTGGCTACTGGTTCTAATGACGGATTAGTTAGAATATGGGACAGTCGATCTGGTGAATGTGTCAGAACTTTCAGAGGGCACTCTGAAAACATTCAATCTCTTTCTTTGTCTGCTAATGGCGAGTACCTTGTCTCGGCTTCTATGGATCATACAGCTCGTGTTTTTGATGTTAAAGGATTTCGTTAA 1212 0.4472 MSDPNPHDSGDEDNNNNDVFIDESDIVHEVASDDDEVLPDADANDADGDGDGSSEPDDDDAEHIFTGHTGELYSVACSPTDTELVATGGGDDRGFLWKINNGEWASELKGHEESVSSLGFSHDGTFLASGGLDGTIKIWDASGNLKGELEGAGGGIEWLRWHPRGNMLMAGFEESPSVWMWNVKNLSIFMSFDGHASKVTCGDFTPDGRIICTGSDDATLRIWNPKTGESIHVVRGHPYHTEGITCLAINPASTIALTGSQDGSVHIVNITTGRVVSTLPSHSSSIECVGFAPSPPNAPSGSRAAIGGLDKMIIWDVEHSLVRSTCEHEYGVTCLIWLGTSYVATGSNDGLVRIWDSRSGECVRTFRGHSENIQSLSLSANGEYLVSASMDHTARVFDVKGFR* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 140 IPR001680 GO:0005515
Tpr1g0919 403 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 402 - -
Tpr1g0919 403 MobiDBLite consensus disorder prediction 35 58 - -
Tpr1g0919 403 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Tpr1g0919 403 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Tpr1g0919 403 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Tpr1g0919 403 SUPERFAMILY WD40 repeat-like 239 400 IPR036322 GO:0005515
Tpr1g0919 403 ProSitePatterns Trp-Asp (WD) repeats signature. 343 357 IPR019775 -
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 140 - -
Tpr1g0919 403 CDD WD40 63 398 - -
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 229 - -
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 101 140 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 318 356 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 185 224 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 58 98 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 142 182 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 359 398 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 227 269 IPR001680 GO:0005515
Tpr1g0919 403 SMART WD40_4 272 316 IPR001680 GO:0005515
Tpr1g0919 403 Pfam WD domain, G-beta repeat 229 267 IPR001680 GO:0005515
Tpr1g0919 403 Pfam WD domain, G-beta repeat 190 224 IPR001680 GO:0005515
Tpr1g0919 403 Pfam WD domain, G-beta repeat 107 140 IPR001680 GO:0005515
Tpr1g0919 403 Pfam WD domain, G-beta repeat 360 398 IPR001680 GO:0005515
Tpr1g0919 403 Pfam WD domain, G-beta repeat 325 356 IPR001680 GO:0005515
Tpr1g0919 403 SUPERFAMILY WD40 repeat-like 62 294 IPR036322 GO:0005515
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 403 IPR001680 GO:0005515
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 366 403 - -
Tpr1g0919 403 Gene3D - 58 401 IPR015943 GO:0005515
Tpr1g0919 403 MobiDBLite consensus disorder prediction 1 58 - -
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 107 IPR001680 GO:0005515
Tpr1g0919 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 365 IPR001680 GO:0005515
Tpr1g0919 403 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0919 Tpr-Chr1 7828627 7835522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0919 182 402 Miscellaneous Gene Families AT5G08390 25.764 3.11e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0919 K24725 - gmx:100790414 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0919 1 7828627 7835522 Tpr1g0919 1 7828627 7835522 ECH