Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01078 ATGCGACGTGACATTGCCAAGTTACTTGAGACTGGCCAAGAAGCCACTGCTCGCATTAGGGTAGAGCATATCATCAGAGAGGAGAACATGATGGCAGCTCAAGAGATCCTTGAACTCTTTTGTGAACTGGTTTCGGTCCGCCTTCCAATAATTGAATCTCAAAGGGAATGTCCCCTAGACTTGAAGGAAGCTATATCTAGTATATGTTTTGCTGCACCAAGGTGTGCTGATCTGCCAGAGTTGATACAAGTTCAGATGCAATTTGCGACCAAATATGGGAAGGAGTTTATTTCTGCTGCTACTGAGCTCAGGCCTGATTGTGGTGTTAATCGCCAGTTAATTGAGCTGCTGTCAGTTCGTGCTCCTTCAGCAGAAAAGAAACTCAATCTTCTAAAAGACATTGCTGCTGAACATGACCTAGATTGGGATCCAGCTACTGCGGAAACTGAGTTCTTGAAAAAGCATGAAGACTTATTGAATGGCCCAGCCGAATTTTTTAGTGGGTCAAAATTACCCCTTCCTGAAGAAAAGCACAACGAGGAGTTGTATTCCACTCATGATACACCCAATAAAGAGCAACCCGACTCTGATTCGGACTCTGACATATTAGACTTCCCTGAAGTTCCAAAGGCATCTGTCCAGCCAAATGCGAATTTTGCCACGGCTCCAGACATGGTTATACCTCCGGCAACTATGCCACACCCTGAAGTTGATCTTCATTCATCAAGCCATTCTGAAGATTTTGCAGATTTGAAGCAGGAACATGTTGAATCAATCGTTCACAAAGATGACCCCCATACTTCATTTGGAAAAATGGAAAGTAAACAGTTTTTGCCATTCATCTCCCCTCCATCAGAACCGTCTGCATCATCTGCATCATATAATGCAAGGCATAATGACTTGCCTCCCTCCTTATCAACTGCAAAATCTATCTCCTCTCCATCAGTATCATCTGCACCATATAATGCAACACACAGTGACTCGCCTCCCTTCTCTTCAAAGGCAAAATCTGTCTCCCCTCCATCAGAAACATTTGCATCATATAGTGCAACAAGGCATAGTGACTCACCTCCCAATTTGTCAACTGTAAACTCTGTCTCCCCTCCATCAGAAACATTTGCATCATATAATGCAACAAGGCATAGTGACTCACCTCCCACTTTGTCAACTGCAAAATCGGAAGATAATTTGAACTTGCAGGATGTTGTAGCTGCTGCACATGCTGCTGCAGAAACGGCTGATCGTGCAGCAGCTGCAGCTCGATCAGCAGCTAGCCTTGCTCAACTTCGTATTAGTGAGCTTACCAAGATGAGAAGTAATGAACATATACCTGACAGTAGCTCTGAGAATCCATTTTATGCTGGTGGCAACAGTGAATCTACAACTGAAAGGGATAGTTTCACTGAGCAAAATGTTTCAGGTAACCCTGATGGAAATGTTTTTAAGGATCATGATATTCACGAGGATCATTATGCTTCCATAGGCACTCACTCATCATCAAGTTTTCCGTCATTTGATACACTCAAGGAAGATTTTGGTAATTCCCCACCTACTGATCATGTATTGGATAACAATTCCAGTAGTCACCAACCTAAAAGATTAGCTTCAATGGATGACGACCCATATTTCTCATATCCAAATTTATTTACCTCTCAAAACTCAAATGTTGGATCTTACAATCATTCAGATAATAACCGTTCCACTTATGATATGTGA 1716 0.4248 MRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELVSVRLPIIESQRECPLDLKEAISSICFAAPRCADLPELIQVQMQFATKYGKEFISAATELRPDCGVNRQLIELLSVRAPSAEKKLNLLKDIAAEHDLDWDPATAETEFLKKHEDLLNGPAEFFSGSKLPLPEEKHNEELYSTHDTPNKEQPDSDSDSDILDFPEVPKASVQPNANFATAPDMVIPPATMPHPEVDLHSSSHSEDFADLKQEHVESIVHKDDPHTSFGKMESKQFLPFISPPSEPSASSASYNARHNDLPPSLSTAKSISSPSVSSAPYNATHSDSPPFSSKAKSVSPPSETFASYSATRHSDSPPNLSTVNSVSPPSETFASYNATRHSDSPPTLSTAKSEDNLNLQDVVAAAHAAAETADRAAAAARSAASLAQLRISELTKMRSNEHIPDSSSENPFYAGGNSESTTERDSFTEQNVSGNPDGNVFKDHDIHEDHYASIGTHSSSSFPSFDTLKEDFGNSPPTDHVLDNNSSSHQPKRLASMDDDPYFSYPNLFTSQNSNVGSYNHSDNNRSTYDM 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01078 571 MobiDBLite consensus disorder prediction 278 395 - -
Trre11g01078 571 MobiDBLite consensus disorder prediction 281 395 - -
Trre11g01078 571 MobiDBLite consensus disorder prediction 505 571 - -
Trre11g01078 571 MobiDBLite consensus disorder prediction 181 204 - -
Trre11g01078 571 Pfam Regulator of Vps4 activity in the MVB pathway 1 140 IPR005061 GO:0015031
Trre11g01078 571 FunFam IST1-like protein isoform A 1 151 - -
Trre11g01078 571 MobiDBLite consensus disorder prediction 181 198 - -
Trre11g01078 571 MobiDBLite consensus disorder prediction 518 532 - -
Trre11g01078 571 MobiDBLite consensus disorder prediction 444 477 - -
Trre11g01078 571 Gene3D - 1 149 IPR042277 -
Trre11g01078 571 MobiDBLite consensus disorder prediction 437 483 - -
Trre11g01078 571 PANTHER IST1 FAMILY MEMBER 1 552 IPR005061 GO:0015031
Trre11g01078 571 MobiDBLite consensus disorder prediction 545 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01078 Trre-Chr11 10264774 10267957 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01078 - - tpra:123907752 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01078 11 10264774 10267957 Trre11g01078 11 10264774 10267957 ECH