Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03451 ATGGCCATGTTTGATTCCATCTTCAACAAAGGTTTTAAGGCTGCCAAATGTAAAACTCTGCTGAAACTGACAATTCCGCGAATAAAGCTTTTAAGAAACAGAAGAGAGATTCAGTTGAAGAATATGCGGCGCGACATTGCCAAGCTACTTGAGACTGGCCAAGAAGCAACAGCTCGTATTAGGGTAGAACATATTATCAGAGAGGAGAATATGATGGCTGCTCAAGAAATCATTGAACTATTTTGCGAACTTATTGCTGTTCGTCTTCCTATAATTGAATCTCAAAGGGAATGTCCCCTTGACTTGAAGGAAGCCATATCTAGTGTGTGTTTTGCTGCTCCAAGGTGTGCCGATCTGCCAGAGTTGTTGCAGGTTCAGATGCTATTTGCTGCCAAATATGGGAAGGAATTTATATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGGGTTAATCGCCAGTTAATAGAGCTACTTTCAATTCGTGCTCCTTCACCAGAAAAGAAACTGAACCTTCTGAAAGAAATTGCTGTTGAACATGATTTAGAATGGGACCCAGCAGCTTCAGAAACTGAGTTCTTTAAAAAACATGAAGATTTATTGAATGGCCCCACTCAATTCTTTAGTGGGTCTAAGTTGCCCCTTCCTGATGAAAAACCCCACGAAGAGATGTACTCTACTCATGAAACAACCAATAAGGAAGAACCTGATTCTGATTCTGGCTCTGATATATTAGAATTTCCTGAAGTTCCCAAGGTATCTGTCCGGCCAAACGCAAATGTTGCCACAGCTCCAGAAGTGGTTACACATCTTACTATGGAACCCCTTGATGTTGATCTTGATTCATCAAGCAATTCTGGAGATTTTGAAGATATCAAGCAGGAGCAAGTTGAAGATAGATCAACAGTTCACAAAGATGAAACACATACTTCAATTGGCAAAGAGAATATACAGTTTGTGCCATTCATCTCCCCTCCAGCAGTATCATCTGGATCATTTTCTGCAAGACCTAGTGACTCATCTCCCACCTTGTCAAGCTCAAAATGTGAACCCCATGTGGACTTACAAGATGTGTTGGCTGCTGCCCATGCTGCTGCAGAAACTGCTGAACGAGCAGCCCTCGCAGCTCGCACAGCTGCTAGTCTTGCTCAAGTCCGAATTAATGAGCTGACTAAGAGGAAAAGTAATGAACATGTATCTGACAGCAGCTCTGAGAACCCGTTTTATGCTGGTGGTGATAATGAATCTCCAACAATAGAAAAGCATTTGAACGAGCAAAATCCTGCAGGTAACTCTGATGTCCATAATAGAAAAGATCTTGAACATTACCAGGATCATTATACTTCCCCAGGCTCTCATTCGTCAAGTTTTCCATCCTTTGACACACTCAAGGAAGATTTTGATTCCTCCCTGCCAAATAATCATTTACTGAATGGCAACTCCTCTAGTCACCAACCCAAGAGATTAACTTCAATGGACGACGACTCATACTTCTCATACCCCAACTTATTTACCTCTCAAAACTCAAATGTTGGATCTCAGACTCATTCAGATAACAGCCGTTCTCCACATGATCTGTGA 1578 0.4208 MAMFDSIFNKGFKAAKCKTLLKLTIPRIKLLRNRREIQLKNMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEIIELFCELIAVRLPIIESQRECPLDLKEAISSVCFAAPRCADLPELLQVQMLFAAKYGKEFISAATELRPDCGVNRQLIELLSIRAPSPEKKLNLLKEIAVEHDLEWDPAASETEFFKKHEDLLNGPTQFFSGSKLPLPDEKPHEEMYSTHETTNKEEPDSDSGSDILEFPEVPKVSVRPNANVATAPEVVTHLTMEPLDVDLDSSSNSGDFEDIKQEQVEDRSTVHKDETHTSIGKENIQFVPFISPPAVSSGSFSARPSDSSPTLSSSKCEPHVDLQDVLAAAHAAAETAERAALAARTAASLAQVRINELTKRKSNEHVSDSSSENPFYAGGDNESPTIEKHLNEQNPAGNSDVHNRKDLEHYQDHYTSPGSHSSSFPSFDTLKEDFDSSLPNNHLLNGNSSSHQPKRLTSMDDDSYFSYPNLFTSQNSNVGSQTHSDNSRSPHDL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03451 525 Coils Coil 32 59 - -
Spst4g03451 525 MobiDBLite consensus disorder prediction 470 525 - -
Spst4g03451 525 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Spst4g03451 525 MobiDBLite consensus disorder prediction 312 348 - -
Spst4g03451 525 MobiDBLite consensus disorder prediction 206 243 - -
Spst4g03451 525 MobiDBLite consensus disorder prediction 392 435 - -
Spst4g03451 525 MobiDBLite consensus disorder prediction 214 239 - -
Spst4g03451 525 MobiDBLite consensus disorder prediction 292 311 - -
Spst4g03451 525 MobiDBLite consensus disorder prediction 470 486 - -
Spst4g03451 525 MobiDBLite consensus disorder prediction 292 348 - -
Spst4g03451 525 FunFam IST1-like protein isoform A 6 192 - -
Spst4g03451 525 PANTHER IST1 FAMILY MEMBER 14 506 IPR005061 GO:0015031
Spst4g03451 525 Gene3D - 5 192 IPR042277 -
Spst4g03451 525 MobiDBLite consensus disorder prediction 494 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03451 Spst-Chr4 75001470 75010818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03451 - - gmx:100800901 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03451 4 75001470 75010818 Spst4g03451 4 75001470 75010818 ECH