Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0892 ATGTCGATGTTTGTTTCTTTCTTCAACAAGGGTTTTAAGGCTGCCAAATGTAAAACCCTGCTGAAACTGACAATGCCACTTATAAAGTTGCTAAGAAACAGAAGAGAGATTCAGTTGAAGAATATGAGACGCGAGATTGCCAAGCTGCTTGAGACCGGTCAAGAAGCCACAGCTCGCATTAGGGTGGAGCATATTATCAGAGAAGAGAATATGATGGCCGCTCAAGAGATCATTGAACTATTTTGTGAACTTATTGCTGTTCGTCTTCCAATAATCGAATCACAAAGGGAATGCCCCTTAGACTTGAAAGAAGCCATATCTAGTGTATGCTTTGCTGCACCAAGGTGCGCCGATCTGCCAGAACTGTTGCAGGTTCAGTTTCTATTTGGTGCCAAATATGGAAATGAGTTTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGTTAATAGAGTTGCTGTCAGTTCGTGCTCCTTCTCCAGAAAAGAAATTGAAACTTCTAAAAGAAATTGCTGTTGAACATGAGTTAGATTGGGATCCAGCTCCTTCAGAAACCGAGTTCTTCAAAAAACATGAAGACTTACTGAATGGCCCCACACAATTTGTTAGTGGGTCGACTTTGCCCCTTCATGAAGAAAAACACAATGAAGAGTTGCACTGCTCTCATGACTCACCCACTAAAGAACAAGCTGATTCTGATTCTGACTCCGACATGTTAGAATTTCCCGAAGTTCCTAAAGTATCAGTCCGGCCAGGTCCAAGTGTTGCCACAGCTCCAGATACAGTTACACCTCTGGTTATGCTTCCCCTTGATGTTGATCTTGATTCATCCAACCATTCTGGAGTTTTCTCAGATATAAATCAGGAACAAGCTGAAGAAAGTTCATCTTTTCCCAAAGATGAACCCCATACTTCATTTGATACAATGGGAGTAAACAAGTTGTACCTATCATCTGGATCACATTCTGCAAGACATAGTGACCCATCTGCCTCGTTGTCTGCAAGACACAGTGAGCCACCTGCCTCCTTGTCAACCACAAAGTCTGAGGCTGAAGTTGATTTGAAGGATGTCTTGGCTGCTGCCAATGCTGCTGCCGAAAGTGCGGAACGAGCTGCAGCTGCAGCTCGCTCAGCGGCTAATCTTGCTCAAGTCCGTATTAATGAGCTTACCAAGAAAAAAAGTGAACATGTACCAGACTGCAGCTCTGAGAACCCATTTTATGCAACTGCTGATAATGAATCTACAATAGAAAGCGGGCATTTCAATGAGCCAACTATTCCATGTAACTCTGATAGAAGTGGGAGAGATGATTTCGAACTTCACCAGGATAATTATACTTCCCCGGGCTCTCATTCATCAAGTTTTCCTTCTTTCGACACACTCAAGGCCGATTTTGTTGCTTCCCTACCAACAGATCATGTAATGGATGATGACAAATCCTCGACTCACCAGCCTAAGAGATTTCCTTCAATGGATAACGACGACCCATATTTCACATACCCCAATTTATTTTCCTCACAAAGCTCAAATGTTGAATCTCATACTCATTCAGATAATGGCTGTTCCACTCATGATCTGTGA 1596 0.4298 MSMFVSFFNKGFKAAKCKTLLKLTMPLIKLLRNRREIQLKNMRREIAKLLETGQEATARIRVEHIIREENMMAAQEIIELFCELIAVRLPIIESQRECPLDLKEAISSVCFAAPRCADLPELLQVQFLFGAKYGNEFLSAATELRPDCGVNRQLIELLSVRAPSPEKKLKLLKEIAVEHELDWDPAPSETEFFKKHEDLLNGPTQFVSGSTLPLHEEKHNEELHCSHDSPTKEQADSDSDSDMLEFPEVPKVSVRPGPSVATAPDTVTPLVMLPLDVDLDSSNHSGVFSDINQEQAEESSSFPKDEPHTSFDTMGVNKLYLSSGSHSARHSDPSASLSARHSEPPASLSTTKSEAEVDLKDVLAAANAAAESAERAAAAARSAANLAQVRINELTKKKSEHVPDCSSENPFYATADNESTIESGHFNEPTIPCNSDRSGRDDFELHQDNYTSPGSHSSSFPSFDTLKADFVASLPTDHVMDDDKSSTHQPKRFPSMDNDDPYFTYPNLFSSQSSNVESHTHSDNGCSTHDL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0892 531 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Lal1g0892 531 Gene3D - 5 191 IPR042277 -
Lal1g0892 531 Coils Coil 363 383 - -
Lal1g0892 531 MobiDBLite consensus disorder prediction 477 495 - -
Lal1g0892 531 Coils Coil 32 59 - -
Lal1g0892 531 PANTHER IST1 FAMILY MEMBER 1 519 IPR005061 GO:0015031
Lal1g0892 531 MobiDBLite consensus disorder prediction 504 522 - -
Lal1g0892 531 MobiDBLite consensus disorder prediction 421 459 - -
Lal1g0892 531 MobiDBLite consensus disorder prediction 323 354 - -
Lal1g0892 531 MobiDBLite consensus disorder prediction 477 531 - -
Lal1g0892 531 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 519 - -
Lal1g0892 531 MobiDBLite consensus disorder prediction 323 353 - -
Lal1g0892 531 MobiDBLite consensus disorder prediction 219 239 - -
Lal1g0892 531 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0892 Lal-Chr1 6373390 6378689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0892 - - gmx:100800901 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0892 1 6373390 6378689 Lal1g0892 1 6373390 6378689 ECH
Lal2g1025 2 7004653 7010174 Lal1g0892 1 6373390 6378689 LSH