Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1420 ATGTCGATGCTCGATTCCTTCTTCAACAAGGGTTTTAAGGCTGCCAAATGTAAAACTCTGCTAAAACTGACAATTCCACGGATAAAGTTGCTAAGAAACAGGAGAGAGATTCAACTGAAGAATATGCGACGCGATATTGCCAAACTACTTGAGACTGGCCAAGAAGCCACAGCTCGTATTAGGAAAGAAAACTGTTCGCCATTCTTGATGTGGTCATCTATGCAGGTAGAGCATATTATCAGAGAAGAGAACATGATGGCTGCTCAAGAGATCATTGAACTCTTTTGCGAACTTATTGCTGTCCGCCTTCCAATAATTGAATCTCAAAGGGAATGTCCTATAGACTTGAAAGAAGCCATTTCTAGTGTATGTTTTGCTGCACCAAGGTGTGCCGATCTGCCAGAGTTGTTGCAGGTTCAGCTACTATTTGCTGGCAAATATGGGAAGGAATTTTTATCTGCTGCGACTGAGCTTCGCCCAGATTGTGGTGTTAATCGCCAGTTAATAGAGCTGCTGTCAGTTCGTGCCCCTTCCCCAGAAAAGAAACTGAACCTTCTAAAAGAAATTGCTGTTGAGCATGATTTAGATTGGGATCCAGCAGCTTCAGAAACTGAGTTCTTTAAAAACCACGAAGATTTATTGAGTGGCCCAACCCAATTTTTTAGTGGGTCAAAATTGCCCCTTCCTGAAGAAAAACACAATGAAGAGGTGTGCTCTGCTCATGATACACCCAGTAAAGAACAACCTGATTCTGATTCTGACTCTGACACATTAGAGTTTCCTGAAGTTCCTAGGGCATCAGTCAGGCCAAATGCAAATGTTGCCACAGCTCCAGAAATGGTTACTCCTCTGACTATGCTTCCCCTTGAAGTTGATCTTCATTCACCAAGCCATTCTGAAGATTTTGAAGATGTAAAGCAGGAGCAAGTTGAAGATAGATCAACGGTTCACAAAGATGAATCCCATAATTCAATTGGTACAATGGAGAATAAACAGTTTGTGCCATTCATCTCCCCTCCACCTGTATCATCTGGATCATTTTCTGCAAGACACAGTGACTCACCTTCCTCATTGTCAAGCACAAAACCTGAAGCAAATGTGGACTTGCAGGATGTGTTGGCTGCTGCCCAAGCAGCTGCTGAAACGGCTGAACGTGCAGCAGCTGCAGCTCGTTCAGCTGCTAGCCTTGCTCAAGTTCGTATTGATGAGCTGACTAAGAAGAAAAGTAGTGAATATGTACCAGACAGCAGCTCTGAGAATCCATTTTATGCCGGTGGTGATAATGAATCTCCAACAAATGAAAAGCATTTCACTGAGAAAAATTCTTCTGGTAGCTCTGATGTCCATAATAGAAATGATGTTGAACATCCCCAAGATCATTATGCTTCCCCAGGTTCTCATTCATCAAGTTTTCCTTCGTTTGACACACTCAAGGAAGATTTTGATTCTTCCCTACCCAATGATCATGTGTTGGATGAAAAATCCTCTAGTCACCAGCCAATGAGATTACCTTCAATGGATGAGGATCCATATTTCTCATACCCCAACTTATTTACCTTCCAAAGCTCAAATGTTGGATCTCAGACACATTCAGATAATGGCCGGTCCACTTATGATCTGTAA 1623 0.4239 MSMLDSFFNKGFKAAKCKTLLKLTIPRIKLLRNRREIQLKNMRRDIAKLLETGQEATARIRKENCSPFLMWSSMQVEHIIREENMMAAQEIIELFCELIAVRLPIIESQRECPIDLKEAISSVCFAAPRCADLPELLQVQLLFAGKYGKEFLSAATELRPDCGVNRQLIELLSVRAPSPEKKLNLLKEIAVEHDLDWDPAASETEFFKNHEDLLSGPTQFFSGSKLPLPEEKHNEEVCSAHDTPSKEQPDSDSDSDTLEFPEVPRASVRPNANVATAPEMVTPLTMLPLEVDLHSPSHSEDFEDVKQEQVEDRSTVHKDESHNSIGTMENKQFVPFISPPPVSSGSFSARHSDSPSSLSSTKPEANVDLQDVLAAAQAAAETAERAAAAARSAASLAQVRIDELTKKKSSEYVPDSSSENPFYAGGDNESPTNEKHFTEKNSSGSSDVHNRNDVEHPQDHYASPGSHSSSFPSFDTLKEDFDSSLPNDHVLDEKSSSHQPMRLPSMDEDPYFSYPNLFTFQSSNVGSQTHSDNGRSTYDL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1420 540 Coils Coil 366 393 - -
Apr6g1420 540 MobiDBLite consensus disorder prediction 408 514 - -
Apr6g1420 540 Gene3D - 5 206 IPR042277 -
Apr6g1420 540 Coils Coil 32 59 - -
Apr6g1420 540 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 529 - -
Apr6g1420 540 MobiDBLite consensus disorder prediction 232 274 - -
Apr6g1420 540 MobiDBLite consensus disorder prediction 294 325 - -
Apr6g1420 540 PANTHER IST1 FAMILY MEMBER 1 529 IPR005061 GO:0015031
Apr6g1420 540 MobiDBLite consensus disorder prediction 521 540 - -
Apr6g1420 540 Pfam Regulator of Vps4 activity in the MVB pathway 18 195 IPR005061 GO:0015031
Apr6g1420 540 MobiDBLite consensus disorder prediction 462 477 - -
Apr6g1420 540 MobiDBLite consensus disorder prediction 232 253 - -
Apr6g1420 540 MobiDBLite consensus disorder prediction 326 363 - -
Apr6g1420 540 MobiDBLite consensus disorder prediction 481 496 - -
Apr6g1420 540 MobiDBLite consensus disorder prediction 294 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1420 Apr-Chr6 22506866 22511514 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1420 - - gmx:100805899 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1420 6 22506866 22511514 Apr6g1420 6 22506866 22511514 ECH