Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1351 ATGGCTAGACCGAGGAGATCTGCTACAAACCCTCCCCTTCCTGCTGACGTGAACCAAATGGCTCACGCCATGGAGGCCATGGCAGCCACTGTTAGGCAGAGTCTAGATATGATTCAGCAGCAGCAAGCTGCAAACCAAGCCGCAGCAGCAGCACAGGCAGCAGCAGCTTCTGCCTCAGCTGCACCTCCTCCTGAATACCATGGTTTGTCAGAGTTTAGGAAGAATGATCCTCCTCAATTCACGGGAGTGGATGGACCAGATGCTGCTGAACTCTGGATTAGGGAGATTGAGAAGATCTTCCTAACTATGGGTTGCGCCGAAGAGAGGAAGGTGTTATATGCTACTTATATGCTGACAGGGGATGCAAAGATGTGGTGGCACGGAGCTCGTGCTATGCTGGAAGCCCGAGGTGAAGTCATCACTTGGGCTGTATTTAGAAGTAGTTTTCTGGGAAAGTGTTTCCCTTCTCATGTTCGTGCTGCCAAAGAGCGGGAGTTTCTAAACTTGGTGCAAGGAAACTCATCAGTTTATGAGTATGCAATACAGTTTGAGCGGCTCTACAGATTTTATTCTCACCCAACCTCGGAGGAGTGGAGATGTCAGAGGTTTTTAGATGGGCTGAGAACTGACATAAAGAGGATTTTGATTCCACTCAGGATTACTGAATTTGCTGACTTGGTGGATCAAGCCACCATTATAGAGAGTCTTAATGCAGAGGATGTTGGTGGAGTTGGGAAGGCTCCATCTAGTAGAGCTGCTAGTAGCTATGGTAATGGAAGTAAGGGTGCTAAGAAGGGCCCCTACAGTCGGTCACTACACCAACAGCAATCTCGACCATCTCAGTCGAGAGGATCGACAGCATCAGCCCCAGTGCCAATAGGGACTGCAACTTCTACATTTCAGCCTAGGGGAGTAACTTCTTCCACTCCTAGAGCCTCAGTGCCACAGATTGTCAGATGTTTCAGATGTGGTGGGCCACACTACCTGAGCCAGTGCCCACAGACTGATGTCAGAGTTTGCTTTTCATGCCAACAGCCAGGGCATCTTGCTAGATACTGTTTCATGCCTAGTGGGGCAGTTTTGTCTTCTGCTAACGCCTTGCACGTTGTGAGACCTAAAGCGACTAGAGCTCCGACGAGAATTAGATCGAGAGCAGAGGGACGTGTATTCACTATTTCTGCATCAGAGGCAGCCCAGGCGACAGATCTCGTTCAGGGGACAGCAGTAGTGGCAGGTACTTCTCTTTCTGTATTGTTTGATTCTGGAGCCACGCACTCTTTTATTGCGGACATTTGTGTGAGAACCTTAGGGTTATCAGTGAGCGATCTAGGATGTGAATTGGTAGTATCGACACCTACTTTAACTTCAATTAAGACTTCAACGGTTGTGTTAGGTGTCCCATAG 1404 0.4879 MARPRRSATNPPLPADVNQMAHAMEAMAATVRQSLDMIQQQQAANQAAAAAQAAAASASAAPPPEYHGLSEFRKNDPPQFTGVDGPDAAELWIREIEKIFLTMGCAEERKVLYATYMLTGDAKMWWHGARAMLEARGEVITWAVFRSSFLGKCFPSHVRAAKEREFLNLVQGNSSVYEYAIQFERLYRFYSHPTSEEWRCQRFLDGLRTDIKRILIPLRITEFADLVDQATIIESLNAEDVGGVGKAPSSRAASSYGNGSKGAKKGPYSRSLHQQQSRPSQSRGSTASAPVPIGTATSTFQPRGVTSSTPRASVPQIVRCFRCGGPHYLSQCPQTDVRVCFSCQQPGHLARYCFMPSGAVLSSANALHVVRPKATRAPTRIRSRAEGRVFTISASEAAQATDLVQGTAVVAGTSLSVLFDSGATHSFIADICVRTLGLSVSDLGCELVVSTPTLTSIKTSTVVLGVP* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1351 467 MobiDBLite consensus disorder prediction 242 310 - -
Apr6g1351 467 CDD retropepsin_like 407 467 - -
Apr6g1351 467 PANTHER DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE 86 341 - -
Apr6g1351 467 PANTHER POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 86 341 - -
Apr6g1351 467 ProSiteProfiles Zinc finger CCHC-type profile. 340 353 IPR001878 GO:0003676|GO:0008270
Apr6g1351 467 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 417 428 IPR001969 GO:0004190|GO:0006508
Apr6g1351 467 Pfam Zinc knuckle 338 353 IPR001878 GO:0003676|GO:0008270
Apr6g1351 467 Pfam Retrotransposon gag protein 114 208 IPR005162 -
Apr6g1351 467 Pfam Retroviral aspartyl protease 386 463 - -
Apr6g1351 467 SMART c2hcfinal6 339 355 IPR001878 GO:0003676|GO:0008270
Apr6g1351 467 SMART c2hcfinal6 319 334 IPR001878 GO:0003676|GO:0008270
Apr6g1351 467 SUPERFAMILY Retrovirus zinc finger-like domains 315 355 IPR036875 GO:0003676|GO:0008270
Apr6g1351 467 Gene3D - 268 358 - -
Apr6g1351 467 MobiDBLite consensus disorder prediction 269 310 - -
Apr6g1351 467 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1351 Apr-Chr6 19529413 19530816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1351 - - aprc:113852046 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1351 6 19529413 19530816 Apr6g1351 6 19529413 19530816 ECH