Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00082 ATGGCTTCCAGAAGCGGAATCAAGCGTGTTCCGATAAAAGATGTTCTTTCATTACTCAGCCAGAGAGTGTCTGTTGTGGCGGTTATCCTCGAATACTCCTTCCCTAAGACTACGAGAGGCACTGATTACTGCTGTGTCTTAAGAATAGTTGATCAATCACATCATGAAACCGGCATGGCTGTTAATCTTTTTGCTCTGACTGCTGATAAGCTTCCCCATGTTGCTGAAGCCGGAGATGTGATTCACCTTTGTAATGTTTTGGTAAGATCGTTTGATGGGGAATATAATCTCGTTTACAGTAAAGCATTTTCCTCTTTTGCCTTATATCAAGGGAAAGATAGTAATGATCTTGTTCCTTATCAAGTTTCTTCTAAGTATCAGCGTACAAATGAGGACAGAATATGCATACACGAACTTAGAAAATGGCGGGTCGACTTTCAGCCGAATGATGGCAGACATGAATTTCGTTTGTTTAAAGAAATCAAGGAAGGGGATCACGTGAATTTGGCATGCAAGATACTTCATTTCGGTGAGGTTGCCAAAGATGAATGGTTTATCTATGTCTGGGACGGTACTGATGCCCCACCAAACACCATACGTTCAAAGATAACCTTTGATGGAAGCATTGACAAGAGTCATTTTCACCTTCTAGACAATGTTAAACTTAAATGGATTAAGTTGGTCAATATGCGCCTTGAAGTGCATGCAGGACTATGGCGTGGTCTTTTTACCCCTTTTACAAAGTTTCGATACACTCCAGCTGAAGATAATCTCATTTTAACACGCAAAAGGTTCTCTGAGGAGCGGATATCTCGGAGATTTGAAATAAATTATTTGGGGTGTGTCCCTGTACCTTCAACTGTGACAGTTGTAACGGTTGATTGTCATTGTGCGCCGCATGTTACTCTGATGGAAGCCCTCACAAATAATCAGGTGACCGCCAAGTTCAAGTGTGTAGTTCGAGTGGTTGCAGCGTTGCCTTGCCAACCTGAAATGCTCCGCTCTCCTGCTGGGATATACAGAATGCGGTTGACCCTAGAGGATGCAACAGCTAGAATTCATGCCTATGTTTTTGCCAAGGATGGGGAGACTCTTTTTGGTGGCTATCCGGACACGGATAGTTTGAGCAAGAAGCTAAACAAATTGCTTGGAGTAACTGAAGGTGGTGCTACCAGTGATAAGAGACATCCGCCATGGGTTTCTGTTTGTCTTGAATCATATTACCTCAATAAAGATGACACCTGGGGAACTAGACATTTCAGAATTTCAGAATCCTTACTTGTTAAGGAAAGGGATTTTCGCAATTTTCCTCTCGTTTTTTCTTCGGATCCATTTCTGATCGAAACAAAGACCCGCACCATGTCGATGCTCGATTCGTTCTTCAAACAGGGTTTTAAAGCTGCTAAATGTAAGACCCTGCTGAAGCTGACAATTCCACGCATAAAGCTTCTAAGGAACAGAAGAGATATCCAGTTAAAGAATATGCGGCGGGAGATTGCCAAGCTACTTGAGACTGGTCAAGAAGCCACAGCTCGCATCAGGGTGGAGCATATTATCAGAGAGGAGAACATGATGGCTGCCCAGGAAATCATTGAACTGTTCTGTGAACTGATTGCTGTGCGACTTCCAATAATCGAGGCACAAAGAATAGGTTTTTGTGTAGCTTCTATATACCATTTGACGCGTTATTCATTTGCTGCCAAATATGGGAAAGAATTTTTATCTTCTGCTACTGAGCTCAGGCCGGACTGTGGTGTTAATCGCCAGTTAATAGAGCTGCTGTCGGTTCGTGCTCCGTCACCTGAAAAGAAACTGAACCTTCTAAAAGAAATTGCTGTTGAGCATGAGATAGAATGGGATCCGGCTGCTTCAGAAACCGAGTTCTTTAAGAAACACGAGGACTTGCTGAATGGCCCCACACAATTTGTTGGGTCAAACGTGCCACCACCTGAAGAAAAACAGGATGAAGAGTCAGACACTGCTCGTGATACATTCAATAAAGAACAACCTGATTCTGATTCCGATTCGGACATGTTAGACTTCCCTGATGTGCCTAAGGTATCGGTCCAGCCAAATGCAAATGTTGCCACAGCTCCAGGAGTTGTTCCACCTCCTGAAGTTGATCTTCGTTCATCTAGCTACTCTGGAGATTTCCCAGATACAAGGCATGAGCAAGTTCATGAGATATCAACTATTCAGAGAGATGAACCCCAGAATACATCTGGTAAAATGGAAAGCAAGCAGTTTGTGCCATTCATCTCCCCTCCTTCACTACCGCCTGGATCATATTCTACTAGACATAGTGATTCTCCTCCCCCCATGTCGAGCACAAAAGTTGAAGCCAATGTGGACTCCTTGTCAAGCTCAAAATCTGAAGCCAATGTGGACCTGCAGGATGTGTTGGCTGCTGCTCATGCTGCCGCAGAAACTGCTGAACGTGCTGCAGCTGCAGCTCGCTCAGCAGCTAGTCTTGCTCAAGTCCGGATTAGTGAGCTTACCAGGAAAAACAGTGAACAGTCACCTGATAGCAGCTCTGTGAACCCATTTTATGCAGGTGGGGACAATCAATCTGTTACAGAAAGGGGACATCTAGCTAAGCATAATTCTGGAGGTACCTCCGATGGCAGTGGCGGAAATACTCCTGAACTTAATCAGGATCACTTTGCTTCACCAGACTCTCATTCTCGTTCACCAAGTTTTCCTTCATTCGATACACTCAAAGCAGATTTTGATACTTCTTTACCAAAAAATCATATAGTGGGAGAGAAATTCTCTGCTCACCAGCCTAATAGATTGCCTTCATTAGATGATGATCCATATTTTTCATACCCCAACTTATTTTCCCGGCAAAGCTCAAATGCAGGATCACAGAATCATCATTCAGATAATAGCCGTTCCACTCATGATATGTGA 2913 0.436 MASRSGIKRVPIKDVLSLLSQRVSVVAVILEYSFPKTTRGTDYCCVLRIVDQSHHETGMAVNLFALTADKLPHVAEAGDVIHLCNVLVRSFDGEYNLVYSKAFSSFALYQGKDSNDLVPYQVSSKYQRTNEDRICIHELRKWRVDFQPNDGRHEFRLFKEIKEGDHVNLACKILHFGEVAKDEWFIYVWDGTDAPPNTIRSKITFDGSIDKSHFHLLDNVKLKWIKLVNMRLEVHAGLWRGLFTPFTKFRYTPAEDNLILTRKRFSEERISRRFEINYLGCVPVPSTVTVVTVDCHCAPHVTLMEALTNNQVTAKFKCVVRVVAALPCQPEMLRSPAGIYRMRLTLEDATARIHAYVFAKDGETLFGGYPDTDSLSKKLNKLLGVTEGGATSDKRHPPWVSVCLESYYLNKDDTWGTRHFRISESLLVKERDFRNFPLVFSSDPFLIETKTRTMSMLDSFFKQGFKAAKCKTLLKLTIPRIKLLRNRRDIQLKNMRREIAKLLETGQEATARIRVEHIIREENMMAAQEIIELFCELIAVRLPIIEAQRIGFCVASIYHLTRYSFAAKYGKEFLSSATELRPDCGVNRQLIELLSVRAPSPEKKLNLLKEIAVEHEIEWDPAASETEFFKKHEDLLNGPTQFVGSNVPPPEEKQDEESDTARDTFNKEQPDSDSDSDMLDFPDVPKVSVQPNANVATAPGVVPPPEVDLRSSSYSGDFPDTRHEQVHEISTIQRDEPQNTSGKMESKQFVPFISPPSLPPGSYSTRHSDSPPPMSSTKVEANVDSLSSSKSEANVDLQDVLAAAHAAAETAERAAAAARSAASLAQVRISELTRKNSEQSPDSSSVNPFYAGGDNQSVTERGHLAKHNSGGTSDGSGGNTPELNQDHFASPDSHSRSPSFPSFDTLKADFDTSLPKNHIVGEKFSAHQPNRLPSLDDDPYFSYPNLFSRQSSNAGSQNHHSDNSRSTHDM 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00082 970 Pfam Regulator of Vps4 activity in the MVB pathway 471 617 IPR005061 GO:0015031
Aip09g00082 970 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 454 549 - -
Aip09g00082 970 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 563 957 - -
Aip09g00082 970 SMART Telo_bind_a_2 9 144 IPR011564 GO:0000723|GO:0000781|GO:0003677
Aip09g00082 970 Pfam Telomeric single stranded DNA binding POT1/CDC13 10 142 IPR011564 GO:0000723|GO:0000781|GO:0003677
Aip09g00082 970 PANTHER IST1 FAMILY MEMBER 454 549 IPR005061 GO:0015031
Aip09g00082 970 PANTHER IST1 FAMILY MEMBER 563 957 IPR005061 GO:0015031
Aip09g00082 970 SUPERFAMILY Nucleic acid-binding proteins 157 208 IPR012340 -
Aip09g00082 970 Coils Coil 492 512 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 639 792 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 759 792 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 944 961 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 732 747 - -
Aip09g00082 970 SUPERFAMILY Nucleic acid-binding proteins 10 145 IPR012340 -
Aip09g00082 970 MobiDBLite consensus disorder prediction 832 854 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 832 908 - -
Aip09g00082 970 CDD hPOT1_OB1_like 10 143 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 921 970 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 650 674 - -
Aip09g00082 970 MobiDBLite consensus disorder prediction 869 902 - -
Aip09g00082 970 Gene3D - 458 628 IPR042277 -
Aip09g00082 970 Gene3D - 10 150 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00082 Aip-Chr9 662768 669601 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00082 - - adu:107491573 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00082 09 662768 669601 Aip09g00082 09 662768 669601 ECH