Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05139 ATGTGTAGCATGTGCGAATATTGTGGTGCAAGCTCGACGGAATCAAATGCCAGCAATAAAAAACATGAAAATGAGAGTAGTTTAAAGTTGAATGCAAAAGTTCCCTTTAAACCTTGTAAATCTTGTGTAGAGAAGCAAGAGCGAGATAATGAAAAACGGAATAGTACAAATCCATATGGAACACCGTATATCAGTCCAACTGCATCGTTGTCAAGTTCTGACAGCTGCGTGTCCACTTGCAGCGAGTTTTCAGTTGATGTGAACTCATTTGACAGGAATAGTCGAGAAGACAGTATAGTCGAAGGTGTTACGGAAGATTTTGATCATAAGTCGAACGCAAAATCACAGATTGTGATGGAAAACAATACCCAAGAAAGAAGTAATAAGATCGAAGGCTATACTGTGAGAGACATAGAGATTGCAGAAGGAGATAGCTTTCAAGAAGCTAAAGCCGATAATTCTGAAAACCCAACTGCTTTGTCTACTGAAGAAAAAGACCATTCTTTTCCAGATGATCTGGATATCCAAATTTGGGAACCACCTAAGCCTTACTCTGCGGATAAAGCGGAAAATAGTGTGATTTGTGATGACGATGATGAAGAGCAGGGTATTGGAATTGCAGACTTAGGAGAGCCAACCTCTATGAGTAGTGCTAAGGATGGATTAGGTGGGGGCTGTAGGCTTAGAGAGGAAAGACAGAGAGAATTGGAAAAAGTAATGAATGGAAACTTTAAGGACCTTGTAGGTCAGCTTCTTAAATCCGTCGGAGTTTCCTCTTCCACCGAAGATGATAAGAATTGGGTGGACATAATTACGTATTTATCTTGGGAAGCGGCTGCGTTTTTGAAGCCTGATGCTATCGAAGGCAATGCAATGAATCCTGATGGATTTGTTAAAGTGAAATGCATTGCAGTTGGTTCTCCCAGCCAAAGCCAACTATTCAAAGGTTCGGTCTTCAAGAAACACGCCTCTCACAAGCGTATGCCGACTAAGTACAAAAATCCAAAGTTGCTGCTGATTAAGGGCATGGTTGGCCATTCTATGAATGCACTGTCCTCATTTGATTCTATGGACCAGGAGAAAGACTATCTGAAATCTAAAATGGATATTATAAAAAGATGTCATCCAAATGTTATATTAGTGGAGAAAACTGTTTCTCGTGATATACAAGAGGCAATTCTGGAAAATGGGATGACACTGGTACTTGATATGAAGCTTCATCGATTGGAAAGAGTTGCACGTTGCACTGGGACACCAATTCTTTCATGTGATGATTTGAACGGACAAAAATTAAGACAGTGTGACTCTATTTATTTTGAGAAATTTGTGGAGGAACATGATGGTATTGGTGAAGGAGGAAAGAGGCCCACCAAGACCTTGATGTTCATTGAAGGATGTCCTACGCGTTTGGGCTGTACGATTTTGCTGAAAGGAACACACAGTGAAGAACTGAAGAGAATCAAATGTGTCATGCGGTGTGCAGTTATCATGGCATATAACTTAATCCTTGAAACCTCCTTTCTTGTTGATCAGAATGTAATGTTCTCTACCATTACTCCAGTTAATGTGGCGGATAACATGCCAACCAAACAAGAATCCAGCGATTCAGCATCAATTATTTCAAGTGTTCCGTCGTCTCTTGAGGATTCTGATGAAAATGGAATAGTTACTACTGATATTCCCATATGCAATGGACTTCATGAAAATTGCACTAATGGTTTAACGGTAGAATCTGAAGATGTTTCCCCATTTTCTTATGAACCATATATTCCAGTTGTCTTTTCTGGATTCACATCACTTTCATCATCTGTGAAGAAGGTTATGGGGGGCAGTTTTCCCTTTGCTGCGTCTGCTCCTTACCAGTCTATATCAACATACTTTCATTTACATGGAAGCAAACCCGATGGCCAGGTCGAAAATTCTTTTTCTATTGTAGACTCTCCGAAGGCAGATGAAAATACCGGGATTGAAGCAAACAATCAGTCTGATGAAGTAAAGTTACTTAATGATGGACTAAGCCTGTCTTCACCTGTGTACCTAGACTCCAACAGAGATATAAGTGAAGTTGATAATGATAGAAAAGAACTTCAAAGTAAAGATGATATCAATGCAGTGTTGAATTCTCAGAGTATTTTGGTCTTGATGTCTAGCCGTAATGCCTTAAGAGGAACCGTGTGCCAGCAAATTCATTTTTCCCATATTATGTTCTACAAAAATTTTGACATCCCATTTGGAAAGTTTCTGCAGGATAACCTACTCAATCAGACAAGACTTTGCGACACCTGTCAAGAATTGTCGGAAGCTCACCTTTACTATTATGCTCATCACGATAAACAGCTTACTATACAAGTGAAGCAATTACCACCAGGAATTGTTTTAGCTGGGGAGGCAGAAAGGAGAATTTGGATGTGGAGCCGCTGTGGAAAATGCAATTCTTGTTCTACAGATAGAGTGTTGATATCCACCACTGCCCGTAGTCTATCATTTGGAAAATATTTGGAGCTTAGCCTTTCACATTATTCATCTAGCAGAAAATCGAGATGCGGCCATTCTATTGATAGGGATTTTCTCTACTTCTTTGGATTAGGTAACATGGTTGCAATGTTCAAATATTCTTCTGTTACTACTTATACAATATCTGTGCCTCCTCAAAAGCTAGAGTTCAGTGGTGCAATGAAACAAGAGTGGCTTTTGAAAGAGACTGAGAATGTGCACATGAAAGGAATATCACTATTCACAGAAATTGCAAACTGTTTGAAGACAATACCATTTGATGGATCGACAACATCTAACCGAGGGTCAATAAGAGAATTCTCTGAGGTTGAGAAGATGTTAAAGCAGGAGCGAGAAGAGTTTGAGGCTAACATCAAGACTGTTGTTGCTAAGAAAGGTGATCCAGACCAGGCTGCCTTCAAACTTCTCTGTCTTAACCGATTGATGTGGTATCTTCTGATTGAATCCGTTGTGTGGAATCAACGCTTGAAATCATTACGCTCTCCTGAGAAGGTTGTGCAAGAGTATAGTTATTCAAAGGTGGAAGGTATTGCTGGTAGAGAAACTGCATCTACAGGTAATCTTAGGGAAGTTGGTGATGCGGATGCCAGTGTACGAATTATGTCGGAAACTTCTGCGGAAGTAAATGAAATCTCATTAAAGGAAATCCCTATCAGTGGATCTCTTCAGGAGTCCAATGAACAGGATGATCCATCCAACACTCTTGATATCCCTGAGAATGTGAAAATACAAACTGCTGATGATTTGGGATCGAAGAGATCTTCTGACCAAAAATTGGAATCGAGTTCAGATGTTTTAACTCAATTTCCATCTGCAAATGGTCATCTTCAAGTACATGAAAACATTCCAATTGCTACAGATATTCAACCTAGTCGTCCAATTGCTGATTCAAAGGTATTCAACAAGAGTGCTTCACTGCATTCACCTGTTTCGGTCTTGCCAGATTCTAATGAATGGTTCTGGAAGCCATTTGCTGATATTCGACAGATGGGCGTAAGGGAGTTTCAGAAAAGTTTCTTCCCAAAATTTGAATATTTGTTCACCTCAATTACAGAACATGTGCCCACAGTCAATCAATTGATCACCGAAGAAGGTCCAAGGTTGCACATTCCTCTCAAGACAGATAATCATATTGTGTCTGATTTTGAGGGTGAACCCTCGAGCATAATTGCTTGTGCACTGGCCTTGTTGAAAGATTCATCTGAGGTGACAGATATTGTTGAAGGTGATGTGAGAGAAAATGGAATAACTTCAAAATCTACAGACTTTTCAAATGGCTCTCAAGATTCAGATGCTCATTCTTCCGGAACCACATCTTCAGAAGGGTCTCAAGCATCTCGTGCTACGGAAAACCATAGCATAGAAGTTCATCTGGGTTCTGCAAAATCGCTTGGGAGGGAAAAATATTCTGTGATTTGTCATTATTTTAAGCAGTTCCGTGCACTTAGGAATTGGTGTTGTCCATCTGAGATTGGTTATATCGCTTCTTTAAGTCGTTGTATGAATTGGGATGCCAAAGGTGGAAAAAGCAAGTCTTTTTTTGCAAAAACGCTTGATGACAGGTTCATCATAAAGGAAATCAAGAAGACGGAACTTGATGCATTTTTGGGGTTCTCATCTCTGTATTTCAAACACATGAGAGAGTCATTTGAGTCTGGGAGCCAAACGTGTCTTGCAAAAATTTTGGGAATATATCAGGTTACTAAAAGACACATCAAAAGTGGAAAAGAGGTTAAACACGACCTCGTGGTGATGGAAAATCTTGCCTACAATCGAAACATTGTACGCCAGTATGATCTTAAAGGTGCCCTTTTTGAGCGGTATACTTCAGCTGCTGTTGGTGCTGGAGATGTTCTTTTGGATCAGAACTTTGTGAATGACATGAACTCTTCCCCATTATATGTCAGTCATAAAGCGAAGCGAGTTCTTCAGCGGGCTGTATGGAATGACACAGCTTTTCTCAATTCAATCAATGTGATGGACTATTCCCTTCTGGTTGGAGTTGATTCTCAGAAGCGCGAGCTTGTTTGTGGGATCATTGATTATCTCAGGCAGTATACCTGGGACAAGCATCTTGAGACATGGATGAAGTCTTCACTTGTTGTGCCCAAGAATGTATTGCCAACCGTAATCTCTCCGAAAGATTACAAGAAGAGGTTCAGACAATTTATGTCAACATATTTTTTGAGTGTACCTGATCACTGGTGTTCTCAAAAGTCCCCTAGTCCATGCAAACTTTACTCCGGGGATGACCCTTCCCAACAAAAATCCTAG 4788 0.4016 MCSMCEYCGASSTESNASNKKHENESSLKLNAKVPFKPCKSCVEKQERDNEKRNSTNPYGTPYISPTASLSSSDSCVSTCSEFSVDVNSFDRNSREDSIVEGVTEDFDHKSNAKSQIVMENNTQERSNKIEGYTVRDIEIAEGDSFQEAKADNSENPTALSTEEKDHSFPDDLDIQIWEPPKPYSADKAENSVICDDDDEEQGIGIADLGEPTSMSSAKDGLGGGCRLREERQRELEKVMNGNFKDLVGQLLKSVGVSSSTEDDKNWVDIITYLSWEAAAFLKPDAIEGNAMNPDGFVKVKCIAVGSPSQSQLFKGSVFKKHASHKRMPTKYKNPKLLLIKGMVGHSMNALSSFDSMDQEKDYLKSKMDIIKRCHPNVILVEKTVSRDIQEAILENGMTLVLDMKLHRLERVARCTGTPILSCDDLNGQKLRQCDSIYFEKFVEEHDGIGEGGKRPTKTLMFIEGCPTRLGCTILLKGTHSEELKRIKCVMRCAVIMAYNLILETSFLVDQNVMFSTITPVNVADNMPTKQESSDSASIISSVPSSLEDSDENGIVTTDIPICNGLHENCTNGLTVESEDVSPFSYEPYIPVVFSGFTSLSSSVKKVMGGSFPFAASAPYQSISTYFHLHGSKPDGQVENSFSIVDSPKADENTGIEANNQSDEVKLLNDGLSLSSPVYLDSNRDISEVDNDRKELQSKDDINAVLNSQSILVLMSSRNALRGTVCQQIHFSHIMFYKNFDIPFGKFLQDNLLNQTRLCDTCQELSEAHLYYYAHHDKQLTIQVKQLPPGIVLAGEAERRIWMWSRCGKCNSCSTDRVLISTTARSLSFGKYLELSLSHYSSSRKSRCGHSIDRDFLYFFGLGNMVAMFKYSSVTTYTISVPPQKLEFSGAMKQEWLLKETENVHMKGISLFTEIANCLKTIPFDGSTTSNRGSIREFSEVEKMLKQEREEFEANIKTVVAKKGDPDQAAFKLLCLNRLMWYLLIESVVWNQRLKSLRSPEKVVQEYSYSKVEGIAGRETASTGNLREVGDADASVRIMSETSAEVNEISLKEIPISGSLQESNEQDDPSNTLDIPENVKIQTADDLGSKRSSDQKLESSSDVLTQFPSANGHLQVHENIPIATDIQPSRPIADSKVFNKSASLHSPVSVLPDSNEWFWKPFADIRQMGVREFQKSFFPKFEYLFTSITEHVPTVNQLITEEGPRLHIPLKTDNHIVSDFEGEPSSIIACALALLKDSSEVTDIVEGDVRENGITSKSTDFSNGSQDSDAHSSGTTSSEGSQASRATENHSIEVHLGSAKSLGREKYSVICHYFKQFRALRNWCCPSEIGYIASLSRCMNWDAKGGKSKSFFAKTLDDRFIIKEIKKTELDAFLGFSSLYFKHMRESFESGSQTCLAKILGIYQVTKRHIKSGKEVKHDLVVMENLAYNRNIVRQYDLKGALFERYTSAAVGAGDVLLDQNFVNDMNSSPLYVSHKAKRVLQRAVWNDTAFLNSINVMDYSLLVGVDSQKRELVCGIIDYLRQYTWDKHLETWMKSSLVVPKNVLPTVISPKDYKKRFRQFMSTYFLSVPDHWCSQKSPSPCKLYSGDDPSQQKS 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05139 1595 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1344 1510 IPR002498 GO:0016307|GO:0046488
Trre1g05139 1595 MobiDBLite consensus disorder prediction 1255 1288 - -
Trre1g05139 1595 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1252 1425 IPR027484 -
Trre1g05139 1595 SUPERFAMILY SAICAR synthase-like 1305 1566 - -
Trre1g05139 1595 MobiDBLite consensus disorder prediction 43 65 - -
Trre1g05139 1595 FunFam Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D 1250 1425 - -
Trre1g05139 1595 Coils Coil 935 962 - -
Trre1g05139 1595 SMART PIPK_2 1282 1567 IPR002498 GO:0016307|GO:0046488
Trre1g05139 1595 Gene3D GroEL 309 478 IPR027409 -
Trre1g05139 1595 CDD Fab1_TCP 247 512 - -
Trre1g05139 1595 CDD PIPKc_PIKfyve 1306 1566 IPR044769 GO:0000285
Trre1g05139 1595 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1249 1566 IPR002498 GO:0016307|GO:0046488
Trre1g05139 1595 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 309 478 - -
Trre1g05139 1595 SUPERFAMILY GroEL apical domain-like 310 478 IPR027409 -
Trre1g05139 1595 MobiDBLite consensus disorder prediction 1057 1078 - -
Trre1g05139 1595 Pfam TCP-1/cpn60 chaperonin family 248 507 IPR002423 GO:0005524
Trre1g05139 1595 MobiDBLite consensus disorder prediction 159 173 - -
Trre1g05139 1595 Gene3D - 1426 1567 - -
Trre1g05139 1595 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1427 1567 - -
Trre1g05139 1595 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 5 1579 - -
Trre1g05139 1595 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05139 Trre-Chr1 57594607 57603722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05139 328 1576 Acyl Lipid Metabolism Gene Families AT1G34260 47.298 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05139 K00921 - gmx:100809696 2297.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05139 1 57594607 57603722 Trre1g05139 1 57594607 57603722 ECH