Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02279 ATGTCAAATCTCATTCAGTACTCATACTTTTTGTTGTACCAGAATAAAGTGTTGGATCGGATGTGTATTATGTGCCATTATTGTGGTGCGGGCTTGTCAGAATCAAATTTTGACAATAAGAAAGAGGGTAATGAGAATAGTCTAAAGTTCAATGTCAAAGTTTCCATTAGGCCTTGCAAATCCTGTGGAGAGAAGCTAGAGCGAGCAAATGCGAAGTGGCGTAGTAATAGTCCATATGTGACACCATTTGTCAGTCCAACTACTTCGTTGCAAAGTACTGATAGCTGTGTCTCCACCTGCAGTGAGTTTTCAGTTGATGTGAACTCATCTGACAGGAATAGTCAAGAAGAATGTAGAGTTGAAGGTGGTGTGGAAGATCTCGGTTATCAGTTGAATGGTTCACAAAAAGTGATGGATAACTATTCAGAAGAAAGCAATAACAACAATGAGGGTTACACAGTGAGAGATGTGGAGATTGTACAAGGGCATAACTTTCAAGAAGAAAAAGCTTATCGTTCCGAAGACCCTATTGAATCCTCTGTTGAGGAAACTGAATATTCTCTTCCTGATGATTTGGAAGTCCAAACTTGGGAACCTCCTGAGCCGGAGAACCCACAGGATGACATGGACAATAGTGTGACCTGTAATGACGATGATGAAGACCACGGCATAGGGGTTGCAAACTGGGGTGAGCCAATTTCTATCAATAGTTCTGAGGATGAATTAAGTGGGAGCTATAGGTTCAAAGAGGAAAAACAAAGAGCAATGGAAGAAATGATGAATGGGAAATTCAAGGCACTTGTTGGTCAGCTTCTTAAATCTGTAGGAGTTTCCTCTTGGGATGAAGGTGATAAGAGTTGGGTGGACGTAGTTACATCTTTATCATGGGAAGCCGCTTCTTTTTTGAAGCCTGATGCAGTAGGAGGTAGTACAATGAATCCTGATGGATATGTTAAAGTGAAGTGCATTGCTGCTGGTTCTCGTGGCCAAAGTCAACTAATCAGAGGTTTGGTCTTCAAAAAACATGCTGCTCACAAGCATATGCCAACTAAGTATAAAAATCCAAGATTATTACTGATTAGCGGCATGCTTGGCCATTCTATTAATGGGCTGTCCTCATTTGACTCCATGGACCAGGAGAAGGATGATCTGAAATCTAAAATGGATCGTATTGAAATGTGCCATCCAAATGTTATATTAGTGGAGAAAACTGTCTCTCGTGATATACAAGAATCAATTTTGGCAAAGGGAATGACACTTGTGCTTGATATGAAGCTTCACCGTCTGGAAAGAGTTGCACGTTGTACTGGTTCACCAATTTTATCATGTGATAATTTGAACGGTCAAAAGCTAAGACACTGTGATTTTATTTACTTTGAGAAGTTTGTGGAGGAACATGATGGGGTTAGTGAGGGAGGAAAGAAGCCCATCAAGACTTTGATGTTCATTGAGGGCTGTCCTACACGTTTGGGCTGCACGATTTTACTGAAAGGAACTCACAGTGATGAACTGAAGAGGATTAAATGTGTCTTGCGCTGTGCAGTTGTCATGGCATATCACTTAATTCTCGAAACTTCCTTTCTTGCTGATCAGAAAGCTATGTTCTCTACCATTCCAGCTGTGAGTGTCCCAGATATCTTGCCAACCAATAAAGAGTCCTGTGATTCAGCAGCGATTAATTCAAGCATTCCATCTCTCGAGTATTCTGGTGAAAATGGAATAGTTAGTACTGATATTCCCATATGCAATGGACTTCAAGAAAAAAACACAAATGGAAACAACTTAGGATCAGAGGTTTTTTCTCCATTCTCTTGTGAACCATATAATCCAGCTGTCCTTTCTGGGTTCTCTGCTATTTCATCTTCTCTTAAGAAAGTTATGGGGGATAGTTTTCCCTCTGCTCAATCTTTATCAGCATACTTTGGTTTCAATGGAAGGAAGCCTGATGGTCAGGTTGATGAGTCAATTTCTGTTTTAAACTCTCCAGAGGCTGATGGAATTACCATGATCGAAGCAAAAAATCATTCTAATGAAGTGAAGTCACTTAATGATGGACAATCCCTGTCTTCACCTGCATGCTTGGACTCCAGTGGGAATATAAGTAAAGATGGCCATAATGATAAAAAAGAACTCCAAAGTAAAGATGATATTGATTCAGTGTTGGATTCTCAGAGTATTTTGGTCTTGATGTCTATCCGGAATGCCTCAAGAGGGACTGTATGCAAGCAAAGTCATTTTTCCCATATTATGTTCTACGATAATTTTGATATTCCACTTGGAAAGTTTCTTGAGGACAACTTGCTCAATCAGACAAGACTTTGTGATGCCTGCCAAGAATTGCCAGATTCCCACTTTTATTATTATGCTCATCACAATAAACAGCTTACAATACAAGTTAAAAGCTTGCCCCAGGAAAAACATTTGCCTGGGGAGGCAGAAGGGAAAATTTGGATGTGGAGCCGTTGTCGAAAATGCAGTTCTGGTTCTACAAAGAGAGTGTTGATATCTACCACAGCCCGTAGTCTATCATTTGGAAAATTTTTGGAGCTTGGCCTTTCTCACTATTCTTCTAGCAGAAAATTGAGTTGTGGCCATTCGCTTGATAGGGATTTTCTCTACTTCTTTGGATTAGGTCACATGGTTGCTATGTTCAGATATTCTTCTGTCACCACATATACCGTGTCTATGCCTCCTCAAAAACTGGAGTTCAATGGTGCAATGAGACAAGAGTGGCTTTTGAAAGAGACCAAGAATGTGTATATGAAAGGCATATCATTATTCAGAGAAGTTGCAAACTGTTTAAAGACAATACAATTTGATGGCCTTGGAGGATCAATTAGAGATTTCTCCGAGGTTGAGAAGATGTTAAAGCAAGAGCAGGAAGAGTTTGAGGCAAATGTCAAGACTGCCCTTGCTAAAAAAGGGGATCTAGACCAGGCTGCTTTCAAACTTCTCAGTTTAAACCGGTTAATGTGGGATCTTTTGATTGAATCCTATGTGTGGGTTCAACGGTTGTACCCATTACACTCACCTGGTGGTTTAAGACTTGAATCTGATGTCTCTGAGAAAGTTATGCAAGATGGGGATTTAGAAATTATGTTTGACACATCTGTTCAAGTACATGAACTACCAATAAAGGAAATTCTTATTGGAGGACCTCTTCTGGAGTGTAATGAACAGGATGATCCATCTAACACACAGGATTTGAAAATTCCTGTCGTTGATGATTTGATATCAAGGAGATCTTCTGACCAAAAGTTGCAATTGAGCCTGGATGTTTCCACTCAGTTACCAGATCATCTTGAAGTACGCAAGAACTCTCCAGTTTCTACAGATACTAATCATCCAGTTGCAGATTTAAAGGTATTAAATAAAAGTGCTTCCAATTCACCAGTTTCCAACTTGCTGGATTCAAATGATTGGTTCTGGAAGCCATTTACCGAGATTCGGCAGATAGGCATAAGGGAATTCCAGAAAAGATTATTGCCAAAATTTGAATCTTTAAGCAGCTCTATTGCTGAATATATACCCACAGCCAATCAATTAATCACTGAAGAAGGTACACGGTTGCATATCCCGCTCAAGAGTGACAATCATCATGTTGTGTCTGACTTTGAGGGTGAATCTTCAAGTATTATTGCTTGTGCACTAGCCTTATTGAAAGATACATATGAGGTATCAGAAGTTGATGCTGAGGACGTTAGAAATGAAATTGGAATAACTTCAAAGTCAACAGAAAGTTTGCATAGCTTGACCCATGGTGCCACCTTAACTTCTTCACAATCATTTTCAAGGAGTTCTTCAGATTCAGAGTCTGTACATTCTGCAGCAAGCATGTCAGAAGAGTTACGAGCCTCTCGTGCTACAGAAAACCATAGCATAGAGATTGCTATGGGTTGTGCAAAATCACTTGGCAGGGAAAAATATTCAGTGATATGTCATTATTTCAAGCAGTTTCGTGAACTTAGAAATTGGTGTTGCCCATCTGAGCTTGATTTTATTGCTTCTTTAAGCCGCTGTAGGAATTGGGATGCCAAAGGTGGAAAAAGCAAGTCCTATTTTGCAAAAACACTTGATGACAGATTCATCATAAAGGAAATAAAGAGGACAGAACTTGATTCATTTTTGGGGTTTTCTTCTTTGTATTTCAAACACATGAGAGAGTCATTTGAATCTGGAAGTCAAACTTGTCTTGCAAAAGTGTTGGGGATCTATCAGGTTACTAAAAGACATGTCAAAAGTGGAAAAGAGGTTAAATATGACCTCATGGTGATGGAAAACCTTACCTACAATCGAAATATTACTCGCCAGTATGATCTTAAAGGTGCTCTTTTTGCCCGGTACAATTCTGCTGCTTATGGTGATGGAGATGTTCTTTTGGATCAGAATTTTGTGAACGACATGAACTCTTCCCCATTATATGTCAGTCATAAAGCAAAGCGTGTTCTTCAACGCGCTGTTTGGAATGACACATCTTTTCTGAATTCAATCAATGTCATGGATTACTCCTTGCTTGTTGGAGTAGATTCTCAGAAGCGCGAGCTAGTCTGCGGGATCATTGATTATCTCAGACAGTATACATGGGACAAACATCTGGAGACATGGATGAAGTCATCACTTGTTGTTCCAAAAAATTTGTTGCCAACTGTTATCTCTCCTAAAGAGTACAAAAAGAGGTTCAGAAAGTTTATGTCTACATATTTTTTTAGTATTCCAGATCACTGGTGTTCTCAGAAATCCTCCAATCCGTGCAAACTTTGTTGCTCAGGGGAAGAAGATGATGATCATCCTTCCCCGGAAAAGCCCTAG 4809 0.3968 MSNLIQYSYFLLYQNKVLDRMCIMCHYCGAGLSESNFDNKKEGNENSLKFNVKVSIRPCKSCGEKLERANAKWRSNSPYVTPFVSPTTSLQSTDSCVSTCSEFSVDVNSSDRNSQEECRVEGGVEDLGYQLNGSQKVMDNYSEESNNNNEGYTVRDVEIVQGHNFQEEKAYRSEDPIESSVEETEYSLPDDLEVQTWEPPEPENPQDDMDNSVTCNDDDEDHGIGVANWGEPISINSSEDELSGSYRFKEEKQRAMEEMMNGKFKALVGQLLKSVGVSSWDEGDKSWVDVVTSLSWEAASFLKPDAVGGSTMNPDGYVKVKCIAAGSRGQSQLIRGLVFKKHAAHKHMPTKYKNPRLLLISGMLGHSINGLSSFDSMDQEKDDLKSKMDRIEMCHPNVILVEKTVSRDIQESILAKGMTLVLDMKLHRLERVARCTGSPILSCDNLNGQKLRHCDFIYFEKFVEEHDGVSEGGKKPIKTLMFIEGCPTRLGCTILLKGTHSDELKRIKCVLRCAVVMAYHLILETSFLADQKAMFSTIPAVSVPDILPTNKESCDSAAINSSIPSLEYSGENGIVSTDIPICNGLQEKNTNGNNLGSEVFSPFSCEPYNPAVLSGFSAISSSLKKVMGDSFPSAQSLSAYFGFNGRKPDGQVDESISVLNSPEADGITMIEAKNHSNEVKSLNDGQSLSSPACLDSSGNISKDGHNDKKELQSKDDIDSVLDSQSILVLMSIRNASRGTVCKQSHFSHIMFYDNFDIPLGKFLEDNLLNQTRLCDACQELPDSHFYYYAHHNKQLTIQVKSLPQEKHLPGEAEGKIWMWSRCRKCSSGSTKRVLISTTARSLSFGKFLELGLSHYSSSRKLSCGHSLDRDFLYFFGLGHMVAMFRYSSVTTYTVSMPPQKLEFNGAMRQEWLLKETKNVYMKGISLFREVANCLKTIQFDGLGGSIRDFSEVEKMLKQEQEEFEANVKTALAKKGDLDQAAFKLLSLNRLMWDLLIESYVWVQRLYPLHSPGGLRLESDVSEKVMQDGDLEIMFDTSVQVHELPIKEILIGGPLLECNEQDDPSNTQDLKIPVVDDLISRRSSDQKLQLSLDVSTQLPDHLEVRKNSPVSTDTNHPVADLKVLNKSASNSPVSNLLDSNDWFWKPFTEIRQIGIREFQKRLLPKFESLSSSIAEYIPTANQLITEEGTRLHIPLKSDNHHVVSDFEGESSSIIACALALLKDTYEVSEVDAEDVRNEIGITSKSTESLHSLTHGATLTSSQSFSRSSSDSESVHSAASMSEELRASRATENHSIEIAMGCAKSLGREKYSVICHYFKQFRELRNWCCPSELDFIASLSRCRNWDAKGGKSKSYFAKTLDDRFIIKEIKRTELDSFLGFSSLYFKHMRESFESGSQTCLAKVLGIYQVTKRHVKSGKEVKYDLMVMENLTYNRNITRQYDLKGALFARYNSAAYGDGDVLLDQNFVNDMNSSPLYVSHKAKRVLQRAVWNDTSFLNSINVMDYSLLVGVDSQKRELVCGIIDYLRQYTWDKHLETWMKSSLVVPKNLLPTVISPKEYKKRFRKFMSTYFFSIPDHWCSQKSSNPCKLCCSGEEDDDHPSPEKP 1602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02279 1602 Gene3D GroEL 329 498 IPR027409 -
Phco6g02279 1602 SMART PIPK_2 1284 1569 IPR002498 GO:0016307|GO:0046488
Phco6g02279 1602 MobiDBLite consensus disorder prediction 701 715 - -
Phco6g02279 1602 CDD PIPKc_PIKfyve 1308 1568 IPR044769 GO:0000285
Phco6g02279 1602 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1247 1568 IPR002498 GO:0016307|GO:0046488
Phco6g02279 1602 SUPERFAMILY SAICAR synthase-like 1307 1569 - -
Phco6g02279 1602 MobiDBLite consensus disorder prediction 166 188 - -
Phco6g02279 1602 FunFam Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D 1252 1427 - -
Phco6g02279 1602 Gene3D - 1428 1569 - -
Phco6g02279 1602 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 22 1581 - -
Phco6g02279 1602 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1248 1427 IPR027484 -
Phco6g02279 1602 MobiDBLite consensus disorder prediction 1259 1286 - -
Phco6g02279 1602 Pfam TCP-1/cpn60 chaperonin family 270 525 IPR002423 GO:0005524
Phco6g02279 1602 MobiDBLite consensus disorder prediction 679 715 - -
Phco6g02279 1602 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 329 498 - -
Phco6g02279 1602 CDD Fab1_TCP 265 531 - -
Phco6g02279 1602 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1346 1512 IPR002498 GO:0016307|GO:0046488
Phco6g02279 1602 SUPERFAMILY GroEL apical domain-like 330 498 IPR027409 -
Phco6g02279 1602 MobiDBLite consensus disorder prediction 679 700 - -
Phco6g02279 1602 MobiDBLite consensus disorder prediction 1259 1284 - -
Phco6g02279 1602 Coils Coil 953 973 - -
Phco6g02279 1602 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1429 1569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02279 Phco-Chr6 44038366 44047347 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02279 6 44038366 44047347 Phco6g02279 6 44038366 44047347 ECH