Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03558 ATGGCTTCCAGAAGCGGAATGAAGTGTTTTCCGATAAAAGATGTTCTTTCATTACTCAGCCAGAGAGTGTCTGTTGTGGCGGTTATCCTCGAATATTCCTTCCCTAAGACTACGAGAGGCACTGATTACTGCTGTGTCTTAAGAATAGTTGATCAATCACATCATGAAACCGGTATGGCTGTTAATCTTTTTTCTCTCACTGCTGATAAGCTTCCCCATGTTGCTGAAGCCGGAGATGTGATTCACCTTTGTAATGTTTCGGTAAGATCGTTTGATGGGGAATATAATCTCGTTTACAGTAAAGCATTTTCCTCTTTTGCCTTATATCAAGGGAAAGATAGTGATGATCTTGTTCCTTATCAAGTTTCTTCTAAGTATCAGCGTACAAATGAGGACAGAATATGCATACACGAACTTAGAAAATGGCGGGTCAACTTTCAGCCAAATGATGGCAGACAGGAATTTCGTTTGTTTAAAGAAATCAAGGAAGGGGATCACGTGAATTTGGCATGCAAGATACTTCATTTCGGTGAGGTTGCCAAAGATGAATGGTTTATCTATGTCTGGGATGGTACTGATGCCCCACCAAACACCATACGTTCAAAGCTAGAAGATGAAATGAATTGTCCACTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTGGGTCCATATTGAGGATAACCTTTGATGGAAGCATTGACAAGAGTCATTTTCACCTTCTAGACAATGTTAAACTTAAATGGATTAAGTTGGTCAATATGCGCCTTGAAGTGCATGCAGGACTATGGCGTGGTTTTTTTACCCCTTTTACAAAGTTTCGATACACTCCAGCTGAAGATAATCTCATTTTAACACGCAAAAGGTTATCTGACGAGCGGATGTCTCGGAGATTTGAAATAAATTATTTGGGGTGTGTCCCTGGACCTTCAACTGTGACAGTTGTAACGGTTGATTGTCATTGTGCGCCGCATGTTACTCTGATGGAAGCCCTCACAAATAATCAGGTGACCGCCAAGTTCAAGTGTGTAGTTCGAGTGGTTGCAGCGTTGCCTTGCCAACCTGAAATGCTCCGCTCTCCTGCTGGGATATACAGAATGCGGTTGACCCTAGAGGATGCAACAGCTAGAATTCATGCCTATGTTTTTGCCAAGGATGGGGAGACTCTTTTTGGTGGCTATCCGGACACGGATAGTTTGAGCAAGAAGCTAAACAAATTGCTTGGAGTAACTGAAGGTGGTGCTACCAGTGATAAGAGAAATCCGCCATGGGTTTCTGTTTGTCTTGAATCATATTACCTCAATAAAGATGACACCTGGGGAACTAGACATTTCAGAATTTCAGAATCCTTACTTGTTAAGGAAAGGGATTTTCGCAATTTTCCTCTCGTTTTTTCTTCGGATCCATTTCTGATCGAAACAAAGAACCGCACCATGTCGATGCTCGATTCGTTCTTCAAACAGGGTTTTAAGGCTGCTAAATGTAAAACCCTGCTGAAGCTGACAATTCCACGCATAAAGCTTCTAAGGAACAGAAGAGATATCCAGTTAAAGAATATGCGGCGGGAGATTGCCAAGCTACTTGAGACTGGTCAAGAAGCCACAGCTCGCATCAGGGTGGAGCATATTATCAGAGAGGAGAACATGATGGCTGCCCAGGAAATCATTGAACTGTTCTGTGAACTGATTGCTGTGCGACTTCCAATAATCGAGGCACAAAGGTATTCTAGCTTTTTTTGCTGGTTCCTTAACTTTTCATCCTACGTGGAGGAAAGCATTTATATAGACTTACCATCAAGGATGAAAGTTATTCTCTTTTATGACATTTTTCCTTGTGAATTTCACTGGCAGTTAATAGAGCTGCTGTCGGTTCGTGCTCCGTCACCTGAAAAGAAACTGAACCTTCTAAAAGAAATTGCTGTTGAGCATGAGATAGAATGGGATCCGGCTGCTTCAGAAACCGAGTTCTTTAAGAAACACGAGGACTTGCTGAATGGCCCCACACAATTTGTTGGGTCAAACGTGCCACCACCTGAAGAAAAACAGGATGAAGAGTCAGACACTGCTCGTGATACATTCAATAAAGAACAACCTGATTCTGATTCCGATTCGGACATATTAGACTTCCCTGATGTGCCTAAGGTATCGGTCCAGCCAAATGCAAATGTTGCCACAGCTCCAGGAGTTGTTCCACCTCCTGAAGTTGATCTTCGTTCATCTAGCTACTCTGGAGATATCCCAGATATAAGGCATGAGCAAGTTCATGAGATATCAACTATTCAGAGAGATGAACCCCAGAATACATCTGGTAAAATGGAAAGCAAGCAGTTTGTGCCATTCATCTCCCCTCCTTCACTACCGCCTGGATCATATTCTACCAGACATAGTGATTCTCCTCCCCCCATGTCGAACACAAAAACTGAAGCCAATGTGGACTCCTTGTCAAGCTCAAAATCTGAAGCCAATGTGGACCTACAGGATGTGTTGGCTGCTGCTCATGCTGCCGCAGAAACTGCTGAACGTGCTGCAGCTGCAGCTCGCTCAGCAGCTAGTCTTGCTCAAGTCCGGATTAGTGAGCTTACCAGGAAAAACAGTGAACAGTCACCTGATAGCAGCTCTGTGAACCCATTTTATGCAGGTGGGGACAATCAATCTGTTACAGAAAGGGGACATCTAGCTAAGCATAATTCTGGAGGTACCTCTGATGGCAGTGGCGGAAATACTCCTGAACTTAATCAGGATCACTTTGCTTCACCAGACTCTCATTCTCGTTCACCAAGTTTTCCTTCATTCGATACACTCAAAGCAGATTTTGATACTTCTTTACCAAAAAATGATATAGTGGGAGAGAAATTCTCTGCTCACCAGCCTAATAGATTGCCTTCATTAGATGATGATCCATATTTTTCATACCCCAACTTATTTTCCCGGCAAAGCTCAAATATAGGATCACAGAATCATCATTCAGATAATAGCCGTTCCACTCATGATATGTGA 3006 0.4238 MASRSGMKCFPIKDVLSLLSQRVSVVAVILEYSFPKTTRGTDYCCVLRIVDQSHHETGMAVNLFSLTADKLPHVAEAGDVIHLCNVSVRSFDGEYNLVYSKAFSSFALYQGKDSDDLVPYQVSSKYQRTNEDRICIHELRKWRVNFQPNDGRQEFRLFKEIKEGDHVNLACKILHFGEVAKDEWFIYVWDGTDAPPNTIRSKLEDEMNCPLXXXXXXXXXXXXXVGSILRITFDGSIDKSHFHLLDNVKLKWIKLVNMRLEVHAGLWRGFFTPFTKFRYTPAEDNLILTRKRLSDERMSRRFEINYLGCVPGPSTVTVVTVDCHCAPHVTLMEALTNNQVTAKFKCVVRVVAALPCQPEMLRSPAGIYRMRLTLEDATARIHAYVFAKDGETLFGGYPDTDSLSKKLNKLLGVTEGGATSDKRNPPWVSVCLESYYLNKDDTWGTRHFRISESLLVKERDFRNFPLVFSSDPFLIETKNRTMSMLDSFFKQGFKAAKCKTLLKLTIPRIKLLRNRRDIQLKNMRREIAKLLETGQEATARIRVEHIIREENMMAAQEIIELFCELIAVRLPIIEAQRYSSFFCWFLNFSSYVEESIYIDLPSRMKVILFYDIFPCEFHWQLIELLSVRAPSPEKKLNLLKEIAVEHEIEWDPAASETEFFKKHEDLLNGPTQFVGSNVPPPEEKQDEESDTARDTFNKEQPDSDSDSDILDFPDVPKVSVQPNANVATAPGVVPPPEVDLRSSSYSGDIPDIRHEQVHEISTIQRDEPQNTSGKMESKQFVPFISPPSLPPGSYSTRHSDSPPPMSNTKTEANVDSLSSSKSEANVDLQDVLAAAHAAAETAERAAAAARSAASLAQVRISELTRKNSEQSPDSSSVNPFYAGGDNQSVTERGHLAKHNSGGTSDGSGGNTPELNQDHFASPDSHSRSPSFPSFDTLKADFDTSLPKNDIVGEKFSAHQPNRLPSLDDDPYFSYPNLFSRQSSNIGSQNHHSDNSRSTHDM 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03558 1001 MobiDBLite consensus disorder prediction 900 933 - -
Adu05g03558 1001 SMART Telo_bind_a_2 9 144 IPR011564 GO:0000723|GO:0000781|GO:0003677
Adu05g03558 1001 CDD hPOT1_OB1_like 8 143 - -
Adu05g03558 1001 Coils Coil 520 540 - -
Adu05g03558 1001 MobiDBLite consensus disorder prediction 975 992 - -
Adu05g03558 1001 PANTHER IST1 FAMILY MEMBER 482 577 IPR005061 GO:0015031
Adu05g03558 1001 PANTHER IST1 FAMILY MEMBER 618 989 IPR005061 GO:0015031
Adu05g03558 1001 Gene3D - 486 605 IPR042277 -
Adu05g03558 1001 Gene3D - 614 659 IPR042277 -
Adu05g03558 1001 MobiDBLite consensus disorder prediction 681 705 - -
Adu05g03558 1001 Pfam Telomeric single stranded DNA binding POT1/CDC13 14 142 IPR011564 GO:0000723|GO:0000781|GO:0003677
Adu05g03558 1001 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 482 577 - -
Adu05g03558 1001 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 618 989 - -
Adu05g03558 1001 Pfam Regulator of Vps4 activity in the MVB pathway 499 577 IPR005061 GO:0015031
Adu05g03558 1001 MobiDBLite consensus disorder prediction 668 1001 - -
Adu05g03558 1001 Gene3D - 10 150 IPR012340 -
Adu05g03558 1001 SUPERFAMILY Nucleic acid-binding proteins 8 146 IPR012340 -
Adu05g03558 1001 MobiDBLite consensus disorder prediction 763 778 - -
Adu05g03558 1001 MobiDBLite consensus disorder prediction 857 885 - -
Adu05g03558 1001 Gene3D - 158 265 IPR012340 -
Adu05g03558 1001 MobiDBLite consensus disorder prediction 790 826 - -
Adu05g03558 1001 SUPERFAMILY Nucleic acid-binding proteins 157 261 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03558 Adu-Chr5 108046568 108053458 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03558 - - adu:107491573 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g03558 05 108046568 108053458 Adu05g03558 05 108046568 108053458 ECH