Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03200 ATGAATGCAGCCGACGATGATGACCAGGAGTTTGTCATTGATGAGTGTGACATTCTGGATGAAGTTTCCATAGACGACGAAGACCTTCCAGATGCTTATGATGACCAATATTCTGATTCCGAACATTCCGAGGAGTTGTACTCAGCTGCATGCAGACCAAGCGATGCAACAGAGCATGAACCATGGGAGTTGTACTCAGCTGCTTGCAGCCCAAGCGATGCAACATTGGTGGCAACAGGGGGTCGAGATGACAGAGGATTTCTCTGGAATATTGGCAATGAAGTTTGGTATTCTGAGCTAAAGGGTCATATGGATTCTGTATCTAGTTTAGCTTTTAGCCACGATGGACAGTTTCTTGCTTCGGGATGTTTAGGTGGAATTGTTCAAGTATGGGATGTTTTGGGAAATCTGAAAGGCACACTGGAGGGTCCTAGAGGGGGAATTGAGGTAAAAGAGGTTGTTCTTTTTGTCGCTTGTTATTCTGTGTCATTACAAAAATTAATTCGATATGATATCTTTCAGTGGCTTAGGTGGCATCCGAGAGGACACATACTCTTAGCTGGTTCGGAGGATTCCACAGTTTGGATGTGGAATGCTGAAAGAGCTGCTTTTGCTAATATGTTTGTTGGTCATGGTGCTAGTGTGACCTGTGGTGATTTTACTCCTGATGGGAAAATAATATGTACCGGTTCAGCGGACGCAACTTTGAGAATCTGGAATCCAAAGAGACATCCGTATCATACTGAGGGACTAACATGCTTGTCAATAAGTTCATCATCAACCCTTGCCCTTACCGGTTCCGGTGCCATTCCCGATTCCAGTTCCAAGGATGGATCTGGATCTGGATCTGCCCATATTGTGAATATCTCTACTGGGAAGGTTATTAATACCGTGGTTTCTCATTCAGGGTCCATTGAATGTGTTGGCTTTTCACCAAGTGATTCCTGGGCTGCAATTGGGGGATTGGATAAAAAACTTGTCATCTGGGATGTAGAACATTCCTTATCCCGTTCCACTTGTAACCATGAGGATGGAGTGACATGTTTGGCGTGGCTTGATGCTTCGAATTTGGCCACAGGATGCTTGGATGGAAATGTAAGATTATGGGATAGCCGGTCCGGTGAATGCACAACCACATTCCGGGGGCATTCAGCTGCCATTTATGCTCTTTGTGTGTCTGCTGATAACAAGTACCTTGTTTCGGCTTCATACGATGGAACAGCTCGTGTCTTTGAGCTTGGCAGTTAG 1248 0.4511 MNAADDDDQEFVIDECDILDEVSIDDEDLPDAYDDQYSDSEHSEELYSAACRPSDATEHEPWELYSAACSPSDATLVATGGRDDRGFLWNIGNEVWYSELKGHMDSVSSLAFSHDGQFLASGCLGGIVQVWDVLGNLKGTLEGPRGGIEVKEVVLFVACYSVSLQKLIRYDIFQWLRWHPRGHILLAGSEDSTVWMWNAERAAFANMFVGHGASVTCGDFTPDGKIICTGSADATLRIWNPKRHPYHTEGLTCLSISSSSTLALTGSGAIPDSSSKDGSGSGSAHIVNISTGKVINTVVSHSGSIECVGFSPSDSWAAIGGLDKKLVIWDVEHSLSRSTCNHEDGVTCLAWLDASNLATGCLDGNVRLWDSRSGECTTTFRGHSAAIYALCVSADNKYLVSASYDGTARVFELGS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 415 - -
Aip09g03200 415 ProSitePatterns Trp-Asp (WD) repeats signature. 357 371 IPR019775 -
Aip09g03200 415 Pfam WD domain, G-beta repeat 374 411 IPR001680 GO:0005515
Aip09g03200 415 Pfam WD domain, G-beta repeat 341 370 IPR001680 GO:0005515
Aip09g03200 415 Pfam WD domain, G-beta repeat 176 198 IPR001680 GO:0005515
Aip09g03200 415 Pfam WD domain, G-beta repeat 294 330 IPR001680 GO:0005515
Aip09g03200 415 Pfam WD domain, G-beta repeat 208 240 IPR001680 GO:0005515
Aip09g03200 415 Pfam WD domain, G-beta repeat 99 132 IPR001680 GO:0005515
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 207 IPR001680 GO:0005515
Aip09g03200 415 SUPERFAMILY WD40 repeat-like 64 414 IPR036322 GO:0005515
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 133 IPR001680 GO:0005515
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 133 - -
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 415 IPR001680 GO:0005515
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 379 IPR001680 GO:0005515
Aip09g03200 415 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Aip09g03200 415 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Aip09g03200 415 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 240 - -
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 332 - -
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 375 - -
Aip09g03200 415 Gene3D - 56 414 IPR015943 GO:0005515
Aip09g03200 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 240 IPR001680 GO:0005515
Aip09g03200 415 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 413 - -
Aip09g03200 415 CDD WD40 99 412 - -
Aip09g03200 415 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 413 - -
Aip09g03200 415 SMART WD40_4 54 90 IPR001680 GO:0005515
Aip09g03200 415 SMART WD40_4 201 240 IPR001680 GO:0005515
Aip09g03200 415 SMART WD40_4 291 330 IPR001680 GO:0005515
Aip09g03200 415 SMART WD40_4 93 132 IPR001680 GO:0005515
Aip09g03200 415 SMART WD40_4 373 412 IPR001680 GO:0005515
Aip09g03200 415 SMART WD40_4 163 198 IPR001680 GO:0005515
Aip09g03200 415 SMART WD40_4 333 370 IPR001680 GO:0005515
Aip09g03200 415 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03200 Aip-Chr9 137517255 137521146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03200 198 413 Miscellaneous Gene Families AT5G08390 25.778 1.39e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03200 K24725 - adu:107467788 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03200 09 137517255 137521146 Aip09g03200 09 137517255 137521146 ECH