Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02093 ATGAATGCTCCACCTCATCATGACGATGAAGACGACAACGAACAAGTTTTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTCGAGGAGGAGGATAGTAATTTTGTGCACAAATTCACTGCTCATACCGGTGAGTTGTACTCAGTTTCCTGCAGCCCCACAGATGCAGCCTTGGTGGTTACTGGGAGCGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGAGATTGGGCTTTTGAGCTTCAAGGTCATGAAGAATCTGTATCTACTTTAGCCTTTAGCTATGATGGTCAGCAATTGGCATCAGTTAGCTTAGATGGAATCATTAAAGTCTGGGATGTATCTGGAAATTTGGAAGGTAGAAATTTTGAAGGACCTGGAGGGGGCATTGAGTGGCTTAGGTGGGATCCAAGAGGACACAGACTCTTAGCTGGTTCTGAGGATTTCAGCATTTGGATGTGGAATACTGATAATGCTGCCTTACTTAAAACATTTATTGGTCATGGCAATAGTGTAACCTGTGGTGATTTTACTCCTGATGGGAAATAA 597 0.4355 MNAPPHHDDEDDNEQVFLDESDIIHEVAMDNEDLPDADDDSELEEEDSNFVHKFTAHTGELYSVSCSPTDAALVVTGSGDDRGFLWKIGQGDWAFELQGHEESVSTLAFSYDGQQLASVSLDGIIKVWDVSGNLEGRNFEGPGGGIEWLRWDPRGHRLLAGSEDFSIWMWNTDNAALLKTFIGHGNSVTCGDFTPDGK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02093 198 Pfam WD domain, G-beta repeat 96 129 IPR001680 GO:0005515
Gma10g02093 198 Pfam WD domain, G-beta repeat 138 171 IPR001680 GO:0005515
Gma10g02093 198 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 88 IPR001680 GO:0005515
Gma10g02093 198 ProSitePatterns Trp-Asp (WD) repeats signature. 116 130 IPR019775 -
Gma10g02093 198 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 131 - -
Gma10g02093 198 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 180 IPR001680 GO:0005515
Gma10g02093 198 Gene3D - 47 198 IPR015943 GO:0005515
Gma10g02093 198 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 131 IPR001680 GO:0005515
Gma10g02093 198 ProSitePatterns Trp-Asp (WD) repeats signature. 158 172 IPR019775 -
Gma10g02093 198 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 198 - -
Gma10g02093 198 SMART WD40_4 47 87 IPR001680 GO:0005515
Gma10g02093 198 SMART WD40_4 90 129 IPR001680 GO:0005515
Gma10g02093 198 SMART WD40_4 132 171 IPR001680 GO:0005515
Gma10g02093 198 SUPERFAMILY WD40 repeat-like 48 198 IPR036322 GO:0005515
Gma10g02093 198 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02093 Gma-Chr10 48466944 48468365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02093 51 198 Miscellaneous Gene Families AT5G08390 25.676 1.36e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02093 K24725 - gmx:100790414 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02093 10 48466944 48468365 Gma10g02093 10 48466944 48468365 ECH