Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2076 ATGGATGCTTCTTCAAGCCCTAATGTTCCACCACCACCTCCTCACGACGAAGATGACGATAACGATGAAGTCTTCATCGACGAGTCTGACATCATCGGTGAAGTTTCCATGGACAATGAAGACCTTCCAGATGCTGACGACGACGACGACGCTGCTTCCGATTCCGAACATCTAGAGGATGTTGATGATTCTGTGCACATATTCACTGGTCATACTGGGGAGTTATACTCAGCTGCTTGCAGCCCCACGGATGCGGCGCTTGTGGCAACCGGCGGTGGAGATGATAGAGGATTTCTCTGGAAGATTGGCCATGGGGATTGGGCTTCTGAGCTGCAAGGTCATAAGGATTCTGTATCTAGTTTAGCTTTTAGCTACGATGGACAGTTTCTTGCGTCAGGAAGTTTAGATGGAGTTGTTCAAGTTTGGGACGTTTCTGGAAATCTGAAATGCGCGCTGGAAGGTCCTGGAGGGGGCATTGAGTGGCTCAGGTGGCATCCAAGGGGACACGTACTCTTAGCTGGTTCTGAGGATTCCACTGTTTGGATGTGGAATTCAGATAAATCTGCCTTTCTTAATTTGTTTGCCGGGCATGGTGCTAGTGTGACCTGTGGTGATTTTACTCCTGATGGGAAAATAATATGCACTGGTTCTGATGATGCAACTTTGAGAATATGGAATCCAAAAAGTGGAGAAAACATTCATGCTGTGCAAGGTCATCCATATCATACCGAGGGATTAACATGCTTGTCAATAAGTTCAAATTCAACTGTCGTTCTTACTGGTTCCAAGGATGGATCTGTCCATATTGTGAATATCTCTACTGGGAGGGTTATTAATACCCTGGCTTCTCATTCAGATTCCATTGAATGTGTTGGGTTTGCTCCAAGTGATTACTGGGCTGCTATTGGAAGCATGGATAAAAAACTGGTCATATGGGATATAGAGCATTCCTTATCCCGAGCCACATGTGAACACGAGGATGGAGTGACATGTTTGGCATGGTTGGGTGCATCGTACGTGGCGACCGGATGTGTGGATGGAAATGTAAGATTATGGGATAGCCGGTCTGGTGAATGTGTTAGAACATTCAGGGGTCACTCTGATGCAATTCAATCTGTTTCTGTGTCTGCTAATCGCGATTACATCGTCTCGGCTTCACTCGATGGAACAGCTCGTGTTTTTGAGGTTTAA 1191 0.4618 MDASSSPNVPPPPPHDEDDDNDEVFIDESDIIGEVSMDNEDLPDADDDDDAASDSEHLEDVDDSVHIFTGHTGELYSAACSPTDAALVATGGGDDRGFLWKIGHGDWASELQGHKDSVSSLAFSYDGQFLASGSLDGVVQVWDVSGNLKCALEGPGGGIEWLRWHPRGHVLLAGSEDSTVWMWNSDKSAFLNLFAGHGASVTCGDFTPDGKIICTGSDDATLRIWNPKSGENIHAVQGHPYHTEGLTCLSISSNSTVVLTGSKDGSVHIVNISTGRVINTLASHSDSIECVGFAPSDYWAAIGSMDKKLVIWDIEHSLSRATCEHEDGVTCLAWLGASYVATGCVDGNVRLWDSRSGECVRTFRGHSDAIQSVSVSANRDYIVSASLDGTARVFEV* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 111 145 - -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 396 - -
Aev09g2076 396 Gene3D - 61 396 IPR015943 GO:0005515
Aev09g2076 396 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 61 334 IPR011047 -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Aev09g2076 396 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 324 394 IPR011047 -
Aev09g2076 396 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 14 396 - -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 396 IPR001680 GO:0005515
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 231 - -
Aev09g2076 396 Coils Coil 396 396 - -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 315 - -
Aev09g2076 396 CDD WD40 110 395 - -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 184 - -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
Aev09g2076 396 ProSitePatterns Trp-Asp (WD) repeats signature. 300 314 IPR019775 -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 358 - -
Aev09g2076 396 SMART WD40_4 61 101 IPR001680 GO:0005515
Aev09g2076 396 SMART WD40_4 316 353 IPR001680 GO:0005515
Aev09g2076 396 SMART WD40_4 145 184 IPR001680 GO:0005515
Aev09g2076 396 SMART WD40_4 104 143 IPR001680 GO:0005515
Aev09g2076 396 SMART WD40_4 187 226 IPR001680 GO:0005515
Aev09g2076 396 SMART WD40_4 229 271 IPR001680 GO:0005515
Aev09g2076 396 SMART WD40_4 356 395 IPR001680 GO:0005515
Aev09g2076 396 SMART WD40_4 274 313 IPR001680 GO:0005515
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 111 145 IPR001680 GO:0005515
Aev09g2076 396 ProSitePatterns Trp-Asp (WD) repeats signature. 130 144 IPR019775 -
Aev09g2076 396 MobiDBLite consensus disorder prediction 1 60 - -
Aev09g2076 396 MobiDBLite consensus disorder prediction 16 57 - -
Aev09g2076 396 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 14 396 - -
Aev09g2076 396 ProSitePatterns Trp-Asp (WD) repeats signature. 340 354 IPR019775 -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 362 IPR001680 GO:0005515
Aev09g2076 396 Pfam WD domain, G-beta repeat 110 143 IPR001680 GO:0005515
Aev09g2076 396 Pfam WD domain, G-beta repeat 194 226 IPR001680 GO:0005515
Aev09g2076 396 Pfam WD domain, G-beta repeat 357 394 IPR001680 GO:0005515
Aev09g2076 396 Pfam WD domain, G-beta repeat 230 269 IPR001680 GO:0005515
Aev09g2076 396 Pfam WD domain, G-beta repeat 152 184 IPR001680 GO:0005515
Aev09g2076 396 Pfam WD domain, G-beta repeat 324 353 IPR001680 GO:0005515
Aev09g2076 396 Pfam WD domain, G-beta repeat 277 313 IPR001680 GO:0005515
Aev09g2076 396 PRINTS G protein beta WD-40 repeat signature 130 144 IPR020472 -
Aev09g2076 396 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Aev09g2076 396 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Aev09g2076 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 193 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2076 Aev-Chr9 23932440 23935618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2076 184 396 Miscellaneous Gene Families AT5G08390 24.537 5.26e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2076 K24725 - gmx:100790414 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2076 09 23932440 23935618 Aev09g2076 09 23932440 23935618 ECH