Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03482 ATGATGGCTGCTCAAGAGATCATTGAACTCTTTTGTGAACTTATTTCTGTCCGCCTTCCAATAATTGAATCTCAAAGGGAGTGTCCCCTAGATTTGAAAGAAGCCATATCTAGTGTATGTTTTGCTGCACCAAGGTGTGCCGATCTGCCGGAGTTGTTGCAGGTTCAGTTGCAATTTGCTACCAAATATGGGAAGGAATTTGTATCTGCTGCTACAGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGTTAATAGAGTTGCTGTCGGTTCGTGCTCCTTCACCAGAAAAGAAACTGAACCTTCTAAAAGAAATCGCTGTTGAGCATGAGTTAGATTGGGATCCAGCTGCTTCAGAAACTGAGTTCTTTAAAAAACATGAAGACCTACTGAATGGCCCCACCCAATTTTTTAGTGGGTCAAAATTGCCCCTTCCAGAAGAAAAACACAATGAAGAGTTGTACTCTGCTCATGATACACCCAATCAAGAACAACTTGATTCTGATTCTGGCTCTGACACATTAGAATTTCCTGAAGTTCCGAAGGTAGCAGTCCAGCCAAATGTAAATGTTGTCACAGCTCAAGAAGTGGTTATACCTCCAGCTATGCCACCCCCTGATGTTGGTCTTCATTCATCAAGCCATTGTGGAGATTTTGTAGAAGAACAGGAGCAAATTGAAGAAGGATCATCGGTTAACAAAGATGAACTCCATACTTTTGGTAAAATGGAAAGTAAACAATTTGTGCCATTCATCTCCCCTCCCTCAGTATCATCTGGATCATATACTGCAAGACATAGTGACCCGCCTCCCTCCTCGTCAAGTAAAAAATCTGAAGCCAATGTGGACTTGCAGGATGTGTTAGCTGCTGCCCATGCTGCTGCTGAAACTGCTGAACGGGCAGCAGCTGCAGCTCGTTCAGCAGCTAGTCTTGCTCAAGCCCGTATTAGTGAGCTTACGAAGAAGAAAAATAGTGAAGATATACAAGACAGCAGCTCCGAGAATCCATTTTATGCTGGTGGGGATAATGAATCTACAGCAATAGAAAGGGGACATTTCAGCGAGCAAAATACTACTGGTAACTCTCAGGACTATGGTAGAAAGGATCTTGAACTACCCCAGGATCACTATACTTCACCCGGCTCTCATTCATCAAGTTTTCCTTCGTTTGACACACTCAAGAAAGATTTTGATTCTTCCCTACCCAATGATCATGCATTGGATGACAAATCCTCTGGTCGCCAGCCTCAGAGATTACCCTCAATGGATGATGACTCATATTTCTCATACCCCAACTTATTTTCCTGTCAAAACTCAAATGTTGGATCTCAGACTCATTCAGATAATAGCCGTTCCACTTATGATCTGTGA 1368 0.4313 MMAAQEIIELFCELISVRLPIIESQRECPLDLKEAISSVCFAAPRCADLPELLQVQLQFATKYGKEFVSAATELRPDCGVNRQLIELLSVRAPSPEKKLNLLKEIAVEHELDWDPAASETEFFKKHEDLLNGPTQFFSGSKLPLPEEKHNEELYSAHDTPNQEQLDSDSGSDTLEFPEVPKVAVQPNVNVVTAQEVVIPPAMPPPDVGLHSSSHCGDFVEEQEQIEEGSSVNKDELHTFGKMESKQFVPFISPPSVSSGSYTARHSDPPPSSSSKKSEANVDLQDVLAAAHAAAETAERAAAAARSAASLAQARISELTKKKNSEDIQDSSSENPFYAGGDNESTAIERGHFSEQNTTGNSQDYGRKDLELPQDHYTSPGSHSSSFPSFDTLKKDFDSSLPNDHALDDKSSGRQPQRLPSMDDDSYFSYPNLFSCQNSNVGSQTHSDNSRSTYDL. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03482 455 Gene3D - 1 122 IPR042277 -
Seca10g03482 455 MobiDBLite consensus disorder prediction 250 280 - -
Seca10g03482 455 MobiDBLite consensus disorder prediction 349 364 - -
Seca10g03482 455 MobiDBLite consensus disorder prediction 396 411 - -
Seca10g03482 455 MobiDBLite consensus disorder prediction 249 280 - -
Seca10g03482 455 MobiDBLite consensus disorder prediction 319 426 - -
Seca10g03482 455 Pfam Regulator of Vps4 activity in the MVB pathway 1 111 IPR005061 GO:0015031
Seca10g03482 455 PANTHER IST1 FAMILY MEMBER 1 436 IPR005061 GO:0015031
Seca10g03482 455 MobiDBLite consensus disorder prediction 376 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03482 Seca-Chr10 62462938 62469807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03482 - - aprc:113867022 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03482 10 62462938 62469807 Seca10g03482 10 62462938 62469807 ECH