Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2229 ATGAGTGATTCACATGCTCATGACCATGAAGAAGAAGACAACAATGACGTTTTCATTGATGAGTCTGATATCATCCATGAAGTTGCCTCCGACGATGAACTTCTTCCTGATGCAGGTGACGACGATTCAGCCGATCCTGGTGGCCCTCCCAGTCCAGGTGGCCCATCCAATCCAGATGACCATGATGATTCTGAGCATATATTCACTGGTCATGATGGGGAATTATATTCAGTTGCCTGCAGCCCAACAGATGAGGCACTGGTTGCAACAGGAGGTGGTGATGACATAGGATTTCTCTGGAAGATCAATAATGGAGATTGGGCTTCTGAGCTTAAGGGTCATACAGATTCTGTATCTAGTTTAGGTTTTAGCCACGATGGAGCGTTTCTGGCATCAGGAAGTTTTGATGGAACTGTTAAAATCTGGGATGCATCTGGTAATCTGAAAGGCACGCTTGATGGTCCTGAAGGGGGTGTTGAGTGGATCAGGTGGCATCCAAGAGGAAACGTACTCATTGCTGGTTTTGATGAGTCCTCCTCAGTTTGGATGTGGAATAGTAATCTTGACTTTCTTATGTCATTTAATGGTCATGCTGGTAGTGTGACTTGTGGTGATTTTACTCCCGATGGGAGAACAATATGTACTGGTTCAGACGATGCAACCTTGAGAATATGGAACCCAAAAAGTGGAGAAAGCATTCATGTTGTGCGAGGTCATCCATACCATACCGAGGGATTAACATGTTTAGCAATAAATTCAACTTCAACTATTGCTCTTACTGGTTCTGTGGATGGATCTGTTCATATTGTGAATATCACTACAGGAAGAGTTGTCAGTACCCTGCCTTCTCATTCTAGTTCCATCGAGTGTGTTGGGTTCGCACCAAGTGGTTCCTGGGCTGCAATTGGAGGCATGGATAAAATGACCATCTGGGATGTAGAGCACTCCTTAGCCCGAAGCATTTGTGAGCACGAGTATGGAGTGACATGTTCAACATGGCTTGGCACATCGTATGTGGCTACCGGATCTAATGATGGAGCTGTGAGATTATGGGACAGTCGATCTGGTGAATGTGTCAGAACATTTAGAGGGCACTCTGAAAGCATTCAATCTCTTTCTTTGTCTGCTAATCGCGAGTACCTGGTCTCGGCTTCTTTAGATCATACAGCTCGTGTTTTTGATGTTAAAGGATTTTGTTAA 1200 0.4458 MSDSHAHDHEEEDNNDVFIDESDIIHEVASDDELLPDAGDDDSADPGGPPSPGGPSNPDDHDDSEHIFTGHDGELYSVACSPTDEALVATGGGDDIGFLWKINNGDWASELKGHTDSVSSLGFSHDGAFLASGSFDGTVKIWDASGNLKGTLDGPEGGVEWIRWHPRGNVLIAGFDESSSVWMWNSNLDFLMSFNGHAGSVTCGDFTPDGRTICTGSDDATLRIWNPKSGESIHVVRGHPYHTEGLTCLAINSTSTIALTGSVDGSVHIVNITTGRVVSTLPSHSSSIECVGFAPSGSWAAIGGMDKMTIWDVEHSLARSICEHEYGVTCSTWLGTSYVATGSNDGAVRLWDSRSGECVRTFRGHSESIQSLSLSANREYLVSASLDHTARVFDVKGFC* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2229 399 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Mal1g2229 399 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Mal1g2229 399 PRINTS G protein beta WD-40 repeat signature 130 144 IPR020472 -
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 357 - -
Mal1g2229 399 SUPERFAMILY WD40 repeat-like 65 396 IPR036322 GO:0005515
Mal1g2229 399 Gene3D - 61 397 IPR015943 GO:0005515
Mal1g2229 399 CDD WD40 110 394 - -
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 231 - -
Mal1g2229 399 SMART WD40_4 104 143 IPR001680 GO:0005515
Mal1g2229 399 SMART WD40_4 187 226 IPR001680 GO:0005515
Mal1g2229 399 SMART WD40_4 314 352 IPR001680 GO:0005515
Mal1g2229 399 SMART WD40_4 145 185 IPR001680 GO:0005515
Mal1g2229 399 SMART WD40_4 229 271 IPR001680 GO:0005515
Mal1g2229 399 SMART WD40_4 355 394 IPR001680 GO:0005515
Mal1g2229 399 SMART WD40_4 61 101 IPR001680 GO:0005515
Mal1g2229 399 SMART WD40_4 274 312 IPR001680 GO:0005515
Mal1g2229 399 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Mal1g2229 399 Pfam WD domain, G-beta repeat 231 269 IPR001680 GO:0005515
Mal1g2229 399 Pfam WD domain, G-beta repeat 324 352 IPR001680 GO:0005515
Mal1g2229 399 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Mal1g2229 399 Pfam WD domain, G-beta repeat 110 143 IPR001680 GO:0005515
Mal1g2229 399 Pfam WD domain, G-beta repeat 356 394 IPR001680 GO:0005515
Mal1g2229 399 Pfam WD domain, G-beta repeat 191 226 IPR001680 GO:0005515
Mal1g2229 399 MobiDBLite consensus disorder prediction 1 33 - -
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 111 143 IPR001680 GO:0005515
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 399 - -
Mal1g2229 399 MobiDBLite consensus disorder prediction 1 68 - -
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 110 IPR001680 GO:0005515
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 361 IPR001680 GO:0005515
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 396 IPR001680 GO:0005515
Mal1g2229 399 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 4 396 - -
Mal1g2229 399 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 4 396 - -
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
Mal1g2229 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 111 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2229 Mal-Chr1 29438945 29446264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2229 191 398 Miscellaneous Gene Families AT5G08390 25.463 6.16e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2229 K24725 - gmx:100790414 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2229 1 29438945 29446264 Mal1g2229 1 29438945 29446264 ECH