Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01187 ATGCTCGATTCCTTCTTCAACAAGGGTTTTAAGGCTGCCAAGTGCAAAACTCTGCTGAAATTGACAATTCCACGAATAAAGTTACTAAGAAACAGAAGAGAGATTCAGTTGAAGAATATGCGACGTGATATTGCCAAGCTACTTGAGACTGGCCAAGAAGCTACAGCTCGTATTAGGGTAGAGCATATTATCAGAGAGGAGAACATGATGGCTGCTCAAGAGATCATTGAACTCTTTTGTGAACTTATCGCTGTCCGCCTTCCAATAATTGAATCTCAAAGGGAATGTCCCCTAGACTTGAAAGAAGCCATATCTAGTGTATGTTTTGCTGCACCAAGATGTGCCGATCTGCCAGAGTTGTTGCAGGTTCAGATGCAATTTGGTACCAAATATGGGAAGGAATTTTTATCTGCTGTTACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGTTAATAGAGCTGCTGTCAGTTCGTGCTCCTTCACCAGAAAAGAAACTGAACCTTCTAAAAGAAATTGCTGTTGAACATGAGTTAGATTGGGATCCAGCTGCTTCAGAAACTGAGTTATCTAAAAAACATGAAGACTTACTGAATGGCCCAACCCAATTTTTTAGTGGATCAAAATTGCCCCTACATGAAGAAAAAAACAATGAAGAGTTGTACTCTGCTCATGATACACCCAATAGAGAACAACATGATTCTGATTCTGGCTCTGATACATTAGAATTTCCTGAAGTTCCTAAGGTAGCAGTCCAGCCAAATGCAAATGTTGCCACAGCTCCCGAAATGGTTATACCTCCAGCTATGCCACCCCCTGAAGTTTATCTTCATTCATCAAGTCATTCTGGAGATTTTGCAGATGTAAAGCAGGAGCAAGTTGAAGAAAGATCAACAATTCACAAAGATGAACTCCATACTTCATATGGTAAAATGGAGAGTAAACAGTTTGTGCCATTCATATCCCCTCCACCAGTATCATCTGGATCATCTACTGCAATACACGGTGACTCACCTCCCTCCTTGTCTAGTGCAAAATCTGAAGAAAATGTGGACTTGCAGGATGTGTTAGCTGCTGCCCATGCTGCTGCTGAAACTGCTGAACGTGCAGCAGCTGCAGCTCGTTCAGCTGCTAGCCTTGCTGAAGTCTGTATTAGTGAGCTTACCAAGAAGAAAAACAATGAACATATACCAGATAACAGCTCTGAGAACCCATTTTATGCGGGTGGTGATAATGAATATACAACAATAGAAAGGGGACATTTCACTGAGCAAAATTCTGTAGGTAACTCTGATGGCAGTGGTAGAAAGGATCTTGAACCTCAGCAGGATCATTATGCTTCCTCAGGCTCTCATTCATCAGGTTTTACTTCGTTTGACACCCTTAAGGAAGATTTTGAATCTTCCCTACCCAAAGATCATGTATTGGATGACAAGACCTCTAGTCATCAACCTAAGAGATTACCTTCAATGGATGATGACTCTTATTTCTCATACCCCAACTTATTTACCTCTCAAAACTCAAATGTTGGATCTCAAACTCATTCAGATAATAGCCGTTCCACTTATGATCTGTGA 1578 0.4138 MLDSFFNKGFKAAKCKTLLKLTIPRIKLLRNRREIQLKNMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEIIELFCELIAVRLPIIESQRECPLDLKEAISSVCFAAPRCADLPELLQVQMQFGTKYGKEFLSAVTELRPDCGVNRQLIELLSVRAPSPEKKLNLLKEIAVEHELDWDPAASETELSKKHEDLLNGPTQFFSGSKLPLHEEKNNEELYSAHDTPNREQHDSDSGSDTLEFPEVPKVAVQPNANVATAPEMVIPPAMPPPEVYLHSSSHSGDFADVKQEQVEERSTIHKDELHTSYGKMESKQFVPFISPPPVSSGSSTAIHGDSPPSLSSAKSEENVDLQDVLAAAHAAAETAERAAAAARSAASLAEVCISELTKKKNNEHIPDNSSENPFYAGGDNEYTTIERGHFTEQNSVGNSDGSGRKDLEPQQDHYASSGSHSSGFTSFDTLKEDFESSLPKDHVLDDKTSSHQPKRLPSMDDDSYFSYPNLFTSQNSNVGSQTHSDNSRSTYDL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01187 525 MobiDBLite consensus disorder prediction 470 525 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 320 349 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 221 240 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 470 490 - -
Rops5g01187 525 Pfam Regulator of Vps4 activity in the MVB pathway 16 179 IPR005061 GO:0015031
Rops5g01187 525 FunFam IST1-like protein isoform A 4 190 - -
Rops5g01187 525 PANTHER IST1 FAMILY MEMBER 12 506 IPR005061 GO:0015031
Rops5g01187 525 Coils Coil 30 57 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 497 525 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 221 243 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 321 349 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 424 454 - -
Rops5g01187 525 MobiDBLite consensus disorder prediction 394 413 - -
Rops5g01187 525 Gene3D - 3 191 IPR042277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01187 Rops-Chr5 25290080 25295004 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01187 - - aprc:113867022 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01187 5 25290080 25295004 Rops5g01187 5 25290080 25295004 ECH