Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00142 ATGGCCATGTTCGATTCCCTCTTCAACAAAGGTTTTAAGGCTGCCAAATGTAAAACTCTACTGAAACTGACAATTCCCCGAATAAAGCTGTTAAGAAACAGAAGAGAGATTCAGTTAAAGAATATGCGGCGTGACATCGCCAAGCTACTTGAGACTGGCCAAGAAGCCACAGCTCGTATTAGGGTAGAACATATTATCAGAGAGGAGAATATGATGGCTGCCCAAGAAATCATTGAACTCTTTTGTGAACTTATTGCTGTCCGTCTTCCAATAATTGAATCTCAAAGGCTAGTCACTAGTAAGTCTTGTGTTGATGAGAATGTTGGTATATCATTCAGACTGATGTTTCCAAAAATGTTACTTTGTTCTACTAATCTAACTAATCAGGAATGTCCACTTGACTTGAAGGAAGCCATATCTAGTGTATGTTTTGCTGCACCAAGGTGTGCAGATCTGCCAGAGTTATTGCAGGTTCAGATGCTATTTGCTGCCAAATATGGGAAGGAATTTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGTTAATAGAGCTACTTTCAATCCGTGCTCCTTCACCAGAAAAGAAACTGAACCTTCTGAAAGAAATTGCAGTTGAGCATGATTTAGAATGGGACCCAGCTGCATCAGAAACTGAGTTCTTTAAAAAACATGAAGATTTATTGAATGGCCCCACCCAATTCTATAGTGGGTCTAAGTTGCCCCTTCCTGATGAAAAACCACACGAAGGGATGTACTCTGCTCATGAAACACCCAATAAAGAAGAACCTGAATCTGATTCTGGCTCTGATACATTAGAATTTCCTGAAGTTCCTAAAGTATCAGTCCGGCCTAACGCAAATGTTGCCACAGCTCCAGAAATGGTTACACATCTGACTATGGAACCCCTTGATGTTGATCTTGATTCATCAAGCAATTCGGGAGATTTTGAAGATGTCAAGCAGGAGCATGTTGAAGATAGATCAACAGTTCACAAAGATGAACCCCATACTTCAATTGCCAAAGAGAATATACAGTTCGTGCCATTCATCTCTCCTCCAGCATTATCATCTGGATCATTTTCTGCAAGACCTAGTGAATCATCTCCCACCTTGTCAAGCGCAAAACCAGAACCCAATGTGGACTTACAGGATGTGTTGGCTGCAGCCCATGCTGCTGCAGAAACTGCTGAACGTGCTGCAGCTGCAGCTCGCACAGCAGCTAGCCTTGCTCAAGTCCGTATTAATGAGCTGACTAAGAAGAGAAGTGATGAACGTGTATCAGACAGCAGCTCCGAGAACCCATTTTATGCTGGTGGTGATAATAAATCTCCAACAAAAGAAAAACATTTCACTGGGCAAAGTCCTGCAGGTAACTCTGATGTCCATAATAGAAAAGATCTTGAACATTACCAGGATCATTATACTTCCCCAGGCTCTCATTCATCAAGCTTTCCTTCCTTTGACACACTCAAGGAAGATTTTGATTCCTCCCTACCCAGTAATCATGTACTGAATGACAACTCCTCTAGTCACCAGCCCAAGAGATTACCTTCAATGGACGATGATTCATACTTCTCATACCCCAACTTATTTACCTCTCAAAACTCGAATGTTGGATCTCAGACTCATTCAGATAATAGCCGTCCCCCTCATGATCTGTGA 1677 0.4216 MAMFDSLFNKGFKAAKCKTLLKLTIPRIKLLRNRREIQLKNMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEIIELFCELIAVRLPIIESQRLVTSKSCVDENVGISFRLMFPKMLLCSTNLTNQECPLDLKEAISSVCFAAPRCADLPELLQVQMLFAAKYGKEFLSAATELRPDCGVNRQLIELLSIRAPSPEKKLNLLKEIAVEHDLEWDPAASETEFFKKHEDLLNGPTQFYSGSKLPLPDEKPHEGMYSAHETPNKEEPESDSGSDTLEFPEVPKVSVRPNANVATAPEMVTHLTMEPLDVDLDSSSNSGDFEDVKQEHVEDRSTVHKDEPHTSIAKENIQFVPFISPPALSSGSFSARPSESSPTLSSAKPEPNVDLQDVLAAAHAAAETAERAAAAARTAASLAQVRINELTKKRSDERVSDSSSENPFYAGGDNKSPTKEKHFTGQSPAGNSDVHNRKDLEHYQDHYTSPGSHSSSFPSFDTLKEDFDSSLPSNHVLNDNSSSHQPKRLPSMDDDSYFSYPNLFTSQNSNVGSQTHSDNSRPPHDL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00142 558 Coils Coil 32 59 - -
Vimu8g00142 558 MobiDBLite consensus disorder prediction 360 382 - -
Vimu8g00142 558 PANTHER IST1 FAMILY MEMBER 14 539 IPR005061 GO:0015031
Vimu8g00142 558 MobiDBLite consensus disorder prediction 360 384 - -
Vimu8g00142 558 MobiDBLite consensus disorder prediction 312 346 - -
Vimu8g00142 558 MobiDBLite consensus disorder prediction 479 519 - -
Vimu8g00142 558 Gene3D - 9 223 IPR042277 -
Vimu8g00142 558 MobiDBLite consensus disorder prediction 247 272 - -
Vimu8g00142 558 MobiDBLite consensus disorder prediction 530 551 - -
Vimu8g00142 558 MobiDBLite consensus disorder prediction 237 281 - -
Vimu8g00142 558 Pfam Regulator of Vps4 activity in the MVB pathway 18 214 IPR005061 GO:0015031
Vimu8g00142 558 MobiDBLite consensus disorder prediction 421 558 - -
Vimu8g00142 558 MobiDBLite consensus disorder prediction 318 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00142 Vimu-Chr8 5370580 5375261 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00142 - - gmx:100800901 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00142 8 5370580 5375261 Vimu8g00142 8 5370580 5375261 ECH