Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2856 ATGTCGATGCTCGATTCCTTCTTCAGCAAGGGTTTTAAAGCTGCCAAGTGCAAAACTCTGCTGAAACTGACAATCCCGCGGATAAAGTTACTAAGAAACAGAAGAGAGATTCAGTTGAAGAATATGCGACGCGATATTGCCAAGCTACTTGAGACTGGCCAAGAAGCGACAGCTCGTATTAGGGTAGAACATATTATTAGAGAAGAGAACATGATGGCTGCTCAAGAGATCATTGAACTCTTCTGTGAACTTGTTGCTGTTCGTCTTCCAATAATTGAGTCTCAAAGGGAATGTCCCCTAGACTTGAAGGAAGCCATATCTAGTATATGTTTTGCAGCACCAAGGTGTGCTGATCTGCCAGAGTTGTTGCAGGTTCAGTTGCAATTTGCTACCAAATATGGGAAGGAATTTGTATCTGCTGCTACTGAGCTCAGGCCGGACTGTGGTGTTAATCGCCAGTTAATAGAGCTTCTGTCAATCCGTGCTCCCTCACCAGAAAAGAAACTTAACCTTTTAAAAGAAATTGCTGTTGAGCACGACTTAGATTGGGATCCAGCTGCTTCAGAAACTGAGTTCTCTAAAAAACATGAAGACTTATTGAATGGCCCCACCCAATTTTTTAGCAGGTCAAAATTGCCGCTTCCTGATGAAAAACACAATGAAGAGTTGTATTCTTCTCATGATACACCCAATGAAGAACAACATGTTTCTGATTCTGATTCTGACACATTTGAATTTCCTGAAGTTCCTAAGGCCTCAGTCCAGCCGAGTGCAAATTTTGTCAGAGCTCAAGAATCAGTTATACAGATGCATCCCATTGAAGTTGATAATCATTATTCATCAGACCATTCTGGAGATTTTGAAGATGTAAAGCAGGATCAAGTTGAAGAAAGATCAAGGGTTCAGAAAGATGAACCCCATGCTTCATTTGGTAAAACGGAGAGTAAACAGTTTGTGCCTTTCATCTCCCCTCCATCAGTATCATCTGGATTCATCTCCCCTCCATCAGCATCATCTGGATCACATACCGTGAGACATAGTGACTCAGCCCCCTCCTCGTCAAGAGGAAAATCTGAAGCCAATGTGGACTTGCAGGATGTGTTAGCTGCTGCCCATGCTGCTGCTGAATCTGCTGAACGCGCAGCAGCTGCAGCTCGCTCAGCGGCTAGCCTTGCTCAAGTCCGCATTAACGAGCTTACCAAGAAGAAAAGTAGTGAAGATATACCAGATAGCAGCTCTGAGAACCCATTTTATGCTGGTGGTGATAATGAATCTAGAACAGAAAGGGGACACTCCACTGAGCAAAATACTGCGGGTATGTCTGATGTCTTTGTCCGAGAGGATCACGAACTTCACCAGGACCATTATGCTTCCCCAGGTTCTCATTCATCAAGTTTTCCTTCATTTGACACCCTGAAGGAAGATTTCAACACTTCTTTACCTGGTGATCATGTATTGGGTGACGATTCCTCTAATCACCAGCCTAAGAGATTACCCTCAATGGATGATGACCCATATTTCTCATACCCCAACTTATTTTCCTCCCAAAACTCAAATGTTGGATCTCAGGATCATGCAGATAATAGCCGTTCCACTCATGATCTATGA 1608 0.4335 MSMLDSFFSKGFKAAKCKTLLKLTIPRIKLLRNRREIQLKNMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEIIELFCELVAVRLPIIESQRECPLDLKEAISSICFAAPRCADLPELLQVQLQFATKYGKEFVSAATELRPDCGVNRQLIELLSIRAPSPEKKLNLLKEIAVEHDLDWDPAASETEFSKKHEDLLNGPTQFFSRSKLPLPDEKHNEELYSSHDTPNEEQHVSDSDSDTFEFPEVPKASVQPSANFVRAQESVIQMHPIEVDNHYSSDHSGDFEDVKQDQVEERSRVQKDEPHASFGKTESKQFVPFISPPSVSSGFISPPSASSGSHTVRHSDSAPSSSRGKSEANVDLQDVLAAAHAAAESAERAAAAARSAASLAQVRINELTKKKSSEDIPDSSSENPFYAGGDNESRTERGHSTEQNTAGMSDVFVREDHELHQDHYASPGSHSSSFPSFDTLKEDFNTSLPGDHVLGDDSSNHQPKRLPSMDDDPYFSYPNLFSSQNSNVGSQDHADNSRSTHDL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2856 535 MobiDBLite consensus disorder prediction 457 475 - -
Lja2g2856 535 Coils Coil 32 59 - -
Lja2g2856 535 MobiDBLite consensus disorder prediction 319 360 - -
Lja2g2856 535 MobiDBLite consensus disorder prediction 277 361 - -
Lja2g2856 535 MobiDBLite consensus disorder prediction 221 251 - -
Lja2g2856 535 MobiDBLite consensus disorder prediction 399 535 - -
Lja2g2856 535 Gene3D - 5 192 IPR042277 -
Lja2g2856 535 MobiDBLite consensus disorder prediction 509 526 - -
Lja2g2856 535 MobiDBLite consensus disorder prediction 221 245 - -
Lja2g2856 535 PANTHER IST1 FAMILY MEMBER 1 524 IPR005061 GO:0015031
Lja2g2856 535 MobiDBLite consensus disorder prediction 277 311 - -
Lja2g2856 535 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Lja2g2856 535 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2856 Lja-Chr2 46192847 46197997 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2856 - - gmx:100800901 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2856 2 46192847 46197997 Lja2g2856 2 46192847 46197997 ECH