Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1472 ATGAACGACCCAGCCCACCATGACGAAGATGAGGATCAAGGGGATGTGTTTATCGATGAAAACGACGTTGTTCAGGAAATCACTGTAGACGACGAAGATCTTCCTGACGTAGAAGGCGAAGATGATGATGCAGAAGATTTTGAGGAAGCTGATGATTCCATGCACATTTTCACTGGTCATACTGGTGAACTTTACACAGTTGCATGCAGCCCAATGGATGCAAGATTAGTGGCAACAGGGGGTGGAGATGATAAAGGATTTATTTGGAAGATTTTTGATGGAGACTGGGCTTTTGAACTTGGAGGTCACAAAGATTCTGTGTGTAGTTTAGACTTTAGTGCTGATGGACAGCTGCTTGCATCTGGAAGCTTTGATGGGTTTGTTAAAATCTGGGATGCATCTTCTGGAGACCTCAAGGGCACACTTGAAGGTCCTGGTGGAGGCATTGAGTGGGTCAGGTGGCATCCAAGAGGACATTTGGTCTTGGCTGGTTCAGAGGATTGCACAGTTTGGATGTGGAATGCTGACAGAAGTGCCTACCTTAACATGTTTTCAGGTCATGCTAGTAGTGTGACATGTGGCAATTTTACTCCTGATGGCAAAACAATCTGTACTGGTTCTGATGATGCAACCTTAAGAATATGGAATCCAAGAAGTGGTGAAAATACCCATGTTGTTAGAGGTCATCCATATCATACTGAGGGACTGACATGCTTGGCAATAACCTCTGATTCAACTCTTGCTCTTACTGGCTCAAAGGATAGTTCTGTCCACATTGTGAACATCGCAACTGGCAAGGTTGTTAGTTCATTGACTTCTCACACAGATTCAATTGAATGTATTGGCCTTTCACTGAGTTCCCCATGGGCTGCAACCGGCGGCATGGATAATAAGCTCGTTGTCTGGGATCTGCAGCATTCATCACCACGCTGCACATGTGACAATGAGGATGGGGTGACATGCTTGTCATGGCTAGGTGATTCTAAGTACGTAGCTGCTGGGTGTGTGGATGGGAAAATTCGAATCTGGGATAGCCTCTCTGGAGATTGTGTGAGAACTTTCAGTGGGCATTCCGATGCCATTCAGTCTCTGGGTGTATCTGCTGATAAGAATTTCCTGGTTTCTGGTTCCCTGGATGGTACTGCCCGGGTATTTGAGATCCCAGAGTTCCAGTGA 1176 0.4583 MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGEDDDAEDFEEADDSMHIFTGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQLLASGSFDGFVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADRSAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLTCLAITSDSTLALTGSKDSSVHIVNIATGKVVSSLTSHTDSIECIGLSLSSPWAATGGMDNKLVVWDLQHSSPRCTCDNEDGVTCLSWLGDSKYVAAGCVDGKIRIWDSLSGDCVRTFSGHSDAIQSLGVSADKNFLVSGSLDGTARVFEIPEFQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1472 391 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 91 IPR001680 GO:0005515
Vvi18g1472 391 ProSitePatterns Trp-Asp (WD) repeats signature. 119 133 IPR019775 -
Vvi18g1472 391 Gene3D - 50 389 IPR015943 GO:0005515
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 391 IPR001680 GO:0005515
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 141 IPR001680 GO:0005515
Vvi18g1472 391 Pfam WD domain, G-beta repeat 266 303 IPR001680 GO:0005515
Vvi18g1472 391 Pfam WD domain, G-beta repeat 220 259 IPR001680 GO:0005515
Vvi18g1472 391 Pfam WD domain, G-beta repeat 138 174 IPR001680 GO:0005515
Vvi18g1472 391 Pfam WD domain, G-beta repeat 348 385 IPR001680 GO:0005515
Vvi18g1472 391 Pfam WD domain, G-beta repeat 182 216 IPR001680 GO:0005515
Vvi18g1472 391 Pfam WD domain, G-beta repeat 99 132 IPR001680 GO:0005515
Vvi18g1472 391 Pfam WD domain, G-beta repeat 317 344 IPR001680 GO:0005515
Vvi18g1472 391 CDD WD40 98 386 - -
Vvi18g1472 391 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 389 - -
Vvi18g1472 391 SUPERFAMILY WD40 repeat-like 56 388 IPR036322 GO:0005515
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 305 - -
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 221 - -
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 391 - -
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 136 - -
Vvi18g1472 391 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Vvi18g1472 391 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Vvi18g1472 391 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Vvi18g1472 391 FunFam Angio-associated migratory cell protein-like protein 50 389 - -
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 344 - -
Vvi18g1472 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 264 303 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 177 216 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 93 132 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 347 386 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 135 174 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 306 344 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 50 90 IPR001680 GO:0005515
Vvi18g1472 391 SMART WD40_4 219 261 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1472 Vvi-Chr18 18137137 18146114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1472 174 391 Miscellaneous Gene Families AT5G08390 22.727 2.93e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1472 K24725 - vvi:100256222 803.897