Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01623 ATGAGTGCTCCACCTCATCATGATGATGACGACGACAACGAAGAAGTTTTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTCCTCGAAGAGGATGAGGATGGTGATTTTGTGCACAAATTCACTGCTCATACCGGGGAGTTGTACTCAGTTGCCTGCAGCCCAACAGATGCAGACTTGGTGGCTACTGCAGGCGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGGGATTGGGCTTTTGAGCTTCAAGGTCACGAAGAATCTGTATCCAGTTTAGCTTTTAGCTATGATGGACAGTGTTTGGCATCAGGAAGCTTAGATGGAATTATTAAAGTCTGGGATGTATCTGGAAATTTGGAAGGTAAAAAATTTGAAGGACCTGGAGGGGGCATTGAGTGGCTTAGGTGGCATCCAAGAGGACACATACTCTTAGCTGGTTCTGAGGATTTCAGCATTTGGATGTGGAATACTGATAATGCTGCCTTACTTAATACATTTATTGGTCATGGTGATAGTGTAACCTGTGGTGATTTTACTCCCGATGGGAAAATAATATGTACTGGTTCTGATGATGCAACCTTGAGAATATGGAATCCAAAAACTGGAGAAAGCACTCATGTTGTGCGGGGCCATCCATATCATACCGAGGGATTAACATGCTTGACAATAAATTCAACTTCAACTCTTGCTCTTTCTGGTTCTAAGGATGGATCGGTCCATATTGTGAATATCACCACAGGAAGAGTTGTTGATAATAATGCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAGGATGGAGTGACATGTTTGGCATGGCTTGGTGCGTCTTATGTGGCTTCTGGTTGTGTGGATGGTAAGGTGAGATTGTGGGACAGCCGGTCTGGTGAATGCGTAAAAACATTGAAGGGGCACTCTGATGCCATTCAGTCTCTTTCTGTGTCTTCTAATCGCAATTACCTTGTCTCGGCCTCGGTTGATGGAACAGCTTGTGCTTTTGAGGTTGAAAATTTTCGGTGA 1176 0.443 MSAPPHHDDDDDNEEVFLDESDIIHEVAMDNEDLPDADDDSELLEEDEDGDFVHKFTAHTGELYSVACSPTDADLVATAGGDDRGFLWKIGQGDWAFELQGHEESVSSLAFSYDGQCLASGSLDGIIKVWDVSGNLEGKKFEGPGGGIEWLRWHPRGHILLAGSEDFSIWMWNTDNAALLNTFIGHGDSVTCGDFTPDGKIICTGSDDATLRIWNPKTGESTHVVRGHPYHTEGLTCLTINSTSTLALSGSKDGSVHIVNITTGRVVDNNALASHSDSIECVGFAPSGSWAAVGGMDKKLIIWDIEHLLPRGTCEHEDGVTCLAWLGASYVASGCVDGKVRLWDSRSGECVKTLKGHSDAIQSLSVSSNRNYLVSASVDGTACAFEVENFR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01623 391 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Gma20g01623 391 Gene3D - 49 389 IPR015943 GO:0005515
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 220 - -
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 353 IPR001680 GO:0005515
Gma20g01623 391 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 390 - -
Gma20g01623 391 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 390 - -
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 133 - -
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 306 IPR001680 GO:0005515
Gma20g01623 391 Pfam WD domain, G-beta repeat 179 215 IPR001680 GO:0005515
Gma20g01623 391 Pfam WD domain, G-beta repeat 274 304 IPR001680 GO:0005515
Gma20g01623 391 Pfam WD domain, G-beta repeat 98 131 IPR001680 GO:0005515
Gma20g01623 391 Pfam WD domain, G-beta repeat 315 344 IPR001680 GO:0005515
Gma20g01623 391 Pfam WD domain, G-beta repeat 348 381 IPR001680 GO:0005515
Gma20g01623 391 Pfam WD domain, G-beta repeat 220 258 IPR001680 GO:0005515
Gma20g01623 391 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 349 - -
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 133 IPR001680 GO:0005515
Gma20g01623 391 ProSitePatterns Trp-Asp (WD) repeats signature. 118 132 IPR019775 -
Gma20g01623 391 CDD WD40 97 382 - -
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 218 260 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 176 215 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 49 89 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 134 173 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 347 386 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 92 131 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 307 344 IPR001680 GO:0005515
Gma20g01623 391 SMART WD40_4 265 304 IPR001680 GO:0005515
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 391 - -
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 306 - -
Gma20g01623 391 ProSitePatterns Trp-Asp (WD) repeats signature. 160 174 IPR019775 -
Gma20g01623 391 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 51 389 IPR011047 -
Gma20g01623 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 391 IPR001680 GO:0005515
Gma20g01623 391 PRINTS G protein beta WD-40 repeat signature 118 132 IPR020472 -
Gma20g01623 391 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Gma20g01623 391 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01623 Gma-Chr20 43307605 43312233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01623 173 390 Miscellaneous Gene Families AT5G08390 26.339 2.02e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01623 K24725 - gmx:100790414 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01623 20 43307605 43312233 Gma20g01623 20 43307605 43312233 ECH