Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3499 CAGTGGCTCTGTAGTGCACTAGTGCATACACAACTACGCATACATCGTCTCTCCTTGTCGTCAATTTACAAATTGTGCCACAAAATGAATGCAGCCGACGATGATGGCAACCATGAGTTTGTCATTGATGAGTGTGACATTCTGGATGAAGTTTCCATAGACGACGAAGACCTTCCAGATGCTTATGATGACCAATATTCTGATTCCGAACATTCCGTTGACGTCGAGGATTCTGTGCATACGTTCATTCGTCATAATGAGGAGTTGTACTCAGCTGCATGCAGACCAAGCGATTCAACAGAGCACAAGATTCGGGAGTTGTACTCAGCTGCTTGCAGCCCAAGCGATGCAACATTGGTGGCAACAGGGGGTCAAGATGACAGAGGATTTCTCTGGAATATTGGCGATGAAGTTTGGTATTCTGAGCTAAAGGGTCATAAGGATTCTGTATCTAGTTTAGCTTTTAGCCACGATGGACAGTTTCTTGCTTCGGGATGTTTAGGTGGAATTGTTCAAGTATGGGATGTTTTGGGAAATCTGAAAGGCACACTGGAGGGTCCTAGAGGGGGAATTGAGTGGCTTAGGTGGCATCCGAGAGGACACATACTCTTAGCTGGTTCAGAGGATTCCACTGTTTGGATGTGGAATGCTGAAAGAGCTGCTTTTGCTAATATGTTTGTTGGTCATGGTGCTAGTGTGACCTGTGGTGATTTTACTCCTGATGGACACCCGTATCATGCTGAGGGACTAACATGCTTGTCAATAAGTTCATCATCAACCCTTGCCCTTACCGGTTCCGGTGCCAATCCCGATTCCAGTTCCAAGTATGGATCTGGATCTGCTCATATTGTGAATATCTCTACTGGGAAGGTTATTAATACCCCGATTTCTCATTCAGGGTCCATTGAATGTGTTGGCTTTTCACCAAGTGATTCCTGGGCTGCAATTGGGGGATTGGATAAAAAACTTGTCATCTGGGATGTAGAACATTCCTTATCCCGTTCCACTTGTAACCATAAGGGTGGAGTGACATGTTTGGCGTGGCTTGATGCTTCAAATTTGGCCACTGGATGCTCGGATGGAAATGTAAGATTATGGGATAGCCGGTCCGGTGAATGCACAACCACATTCCGGGGGCATTCAAATGCCATTTATGCTCTTTGTGTGTCTGCTGATAACAAGTACCTTGTTTCAGCTTCATACGATGGAACAGCTCGTGTCTTTGAGCTTGGCAGTTTGTAG 1242 0.4557 QWLCSALVHTQLRIHRLSLSSIYKLCHKMNAADDDGNHEFVIDECDILDEVSIDDEDLPDAYDDQYSDSEHSVDVEDSVHTFIRHNEELYSAACRPSDSTEHKIRELYSAACSPSDATLVATGGQDDRGFLWNIGDEVWYSELKGHKDSVSSLAFSHDGQFLASGCLGGIVQVWDVLGNLKGTLEGPRGGIEWLRWHPRGHILLAGSEDSTVWMWNAERAAFANMFVGHGASVTCGDFTPDGHPYHAEGLTCLSISSSSTLALTGSGANPDSSSKYGSGSAHIVNISTGKVINTPISHSGSIECVGFSPSDSWAAIGGLDKKLVIWDVEHSLSRSTCNHKGGVTCLAWLDASNLATGCSDGNVRLWDSRSGECTTTFRGHSNAIYALCVSADNKYLVSASYDGTARVFELGSL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3499 413 Pfam WD domain, G-beta repeat 142 175 IPR001680 GO:0005515
Amo19g3499 413 Pfam WD domain, G-beta repeat 291 327 IPR001680 GO:0005515
Amo19g3499 413 Pfam WD domain, G-beta repeat 338 367 IPR001680 GO:0005515
Amo19g3499 413 Pfam WD domain, G-beta repeat 371 408 IPR001680 GO:0005515
Amo19g3499 413 Pfam WD domain, G-beta repeat 179 216 IPR001680 GO:0005515
Amo19g3499 413 Gene3D - 98 411 IPR015943 GO:0005515
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 329 - -
Amo19g3499 413 ProSitePatterns Trp-Asp (WD) repeats signature. 354 368 IPR019775 -
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 176 IPR001680 GO:0005515
Amo19g3499 413 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 242 411 - -
Amo19g3499 413 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 31 243 - -
Amo19g3499 413 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 112 411 IPR011044 -
Amo19g3499 413 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 242 411 - -
Amo19g3499 413 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 31 243 - -
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 372 - -
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 413 - -
Amo19g3499 413 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 413 IPR001680 GO:0005515
Amo19g3499 413 SMART WD40_4 370 409 IPR001680 GO:0005515
Amo19g3499 413 SMART WD40_4 330 367 IPR001680 GO:0005515
Amo19g3499 413 SMART WD40_4 97 133 IPR001680 GO:0005515
Amo19g3499 413 SMART WD40_4 136 175 IPR001680 GO:0005515
Amo19g3499 413 SMART WD40_4 288 327 IPR001680 GO:0005515
Amo19g3499 413 SMART WD40_4 177 216 IPR001680 GO:0005515
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 216 - -
Amo19g3499 413 CDD WD40 108 409 - -
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 176 - -
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Amo19g3499 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 376 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3499 Amo-Chr19 148856784 148860728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3499 216 410 Miscellaneous Gene Families AT5G08390 25.500 8.37e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3499 K24725 - adu:107467788 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3499 19 148856784 148860728 Amo19g3499 19 148856784 148860728 ECH