Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2855 ATGAATTCCTCTGCTGGTCCTTCTGTTCATGATGATGAAGACAATAATGATGATGTTTTTCTGGATGATTCTGACATCATTAATGAAGTCGTCTTGGACAACGAAGATCTTCCTGATGCAGATGACGAATTTGACATGGAACAAGTTGAGGAGCCTGATGATTCTGTGCACATATTCACTGGCCATACTGGGGAATTATACACAGTTTCTTGCAGCCCAACGGATGCAACTTTGGTGGCTACAGGAGGTGGCGATGATAAAGGGTTTCTTTGGAAGATTGGTCAAGGAGATTGGGCTTCTGAACTTCAAGGCCACAAAGATTCTGTATCTAGTCTAGCTTTTAGCTATGATGGACAGTTACTTGCATCAGGAAGCTTAGATGGAATTGTTCAAGTCTGGGATGCATCAGGAATTCATAAAGGTACACTTGAAGGTCCTGGAGGTGGCATTGAGTGGCTGAGGTGGCATCCAAGAGGACACCTACTCTTAGCTGGTGCTGAGGATTCCACTGTTTGGATGTGGAATGCTGATAGAGGTGCCTTTCTTAATACATTTGCTGGTCATGGTGGTAGTGTAACCTGCGGTGATTTCACTCCTGATGGGAAAATAATATGTACTGGTTCTGAAGATGCAACTTTGAGGATATGGAATCCAAAAAGTGGAGAAAACCTCAATGTTGTGCGGGGTCATCCATATCATACTGAGGGATTGACATGCATGTCAATAAGTTCAAGTTCAACTCTCGCTCTTACTGGGTCCAAGGATGGTTCTGTCCATGTTGTGAATATTACTACTGGGAAAGTTATTAGCTCCTTGGCTTCTCATTCGGATTCCATTGAATGTGTCGGGTTTGCACCAAGTGACTCCTGGGCTGCAATTGGAGGCTTGGATCAGAGACTTGTGGTATGGGATATAGAGCATTCATTATCCCGAAGCACATGTGACCATGAGGATGGAGTGACATGTTTGGCATGGGTTGGTGCAGTTCATGTGGCTACTGGTTGTGTGGATGGAATTGTAAGATTATGGGATAGCCGATCTGGTGAATGTGTAAGAACATTCATGGGACACTCTGATGCCATTCAATCTATTTCTGTGTCTGCTAATAGGGATTACATTGTCTCTGTTTCACTTGATGGCACTGCTCGTGTTTTTGAACTTGTAGGGCTTCAGTAA 1176 0.4379 MNSSAGPSVHDDEDNNDDVFLDDSDIINEVVLDNEDLPDADDEFDMEQVEEPDDSVHIFTGHTGELYTVSCSPTDATLVATGGGDDKGFLWKIGQGDWASELQGHKDSVSSLAFSYDGQLLASGSLDGIVQVWDASGIHKGTLEGPGGGIEWLRWHPRGHLLLAGAEDSTVWMWNADRGAFLNTFAGHGGSVTCGDFTPDGKIICTGSEDATLRIWNPKSGENLNVVRGHPYHTEGLTCMSISSSSTLALTGSKDGSVHVVNITTGKVISSLASHSDSIECVGFAPSDSWAAIGGLDQRLVVWDIEHSLSRSTCDHEDGVTCLAWVGAVHVATGCVDGIVRLWDSRSGECVRTFMGHSDAIQSISVSANRDYIVSVSLDGTARVFELVGLQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2855 391 Pfam WD domain, G-beta repeat 55 87 IPR001680 GO:0005515
Sto8g2855 391 Pfam WD domain, G-beta repeat 101 134 IPR001680 GO:0005515
Sto8g2855 391 Pfam WD domain, G-beta repeat 221 260 IPR001680 GO:0005515
Sto8g2855 391 Pfam WD domain, G-beta repeat 267 304 IPR001680 GO:0005515
Sto8g2855 391 Pfam WD domain, G-beta repeat 182 217 IPR001680 GO:0005515
Sto8g2855 391 Pfam WD domain, G-beta repeat 348 385 IPR001680 GO:0005515
Sto8g2855 391 Pfam WD domain, G-beta repeat 141 175 IPR001680 GO:0005515
Sto8g2855 391 Pfam WD domain, G-beta repeat 315 344 IPR001680 GO:0005515
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 175 - -
Sto8g2855 391 MobiDBLite consensus disorder prediction 1 20 - -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 353 IPR001680 GO:0005515
Sto8g2855 391 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 58 389 IPR011047 -
Sto8g2855 391 SMART WD40_4 220 262 IPR001680 GO:0005515
Sto8g2855 391 SMART WD40_4 307 344 IPR001680 GO:0005515
Sto8g2855 391 SMART WD40_4 265 304 IPR001680 GO:0005515
Sto8g2855 391 SMART WD40_4 347 386 IPR001680 GO:0005515
Sto8g2855 391 SMART WD40_4 95 134 IPR001680 GO:0005515
Sto8g2855 391 SMART WD40_4 178 217 IPR001680 GO:0005515
Sto8g2855 391 SMART WD40_4 136 175 IPR001680 GO:0005515
Sto8g2855 391 SMART WD40_4 52 92 IPR001680 GO:0005515
Sto8g2855 391 Gene3D - 52 388 IPR015943 GO:0005515
Sto8g2855 391 ProSitePatterns Trp-Asp (WD) repeats signature. 291 305 IPR019775 -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 391 IPR001680 GO:0005515
Sto8g2855 391 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 6 387 - -
Sto8g2855 391 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 6 387 - -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Sto8g2855 391 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Sto8g2855 391 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Sto8g2855 391 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 391 - -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 134 - -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 134 IPR001680 GO:0005515
Sto8g2855 391 CDD WD40 101 386 - -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 185 222 - -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 101 IPR001680 GO:0005515
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Sto8g2855 391 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Sto8g2855 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 306 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2855 175 389 Miscellaneous Gene Families AT5G08390 25.561 2.62e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2855 K24725 - gmx:100790414 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2855 8 20781879 20787033 Sto8g2855 8 20781879 20787033 ECH